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Report for CCDS36561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36561.1 Public Mus musculus 12 Cinp 23 108 98 CCDS HistoryNCBI Gene:67236Re-query CCDS DB by CCDS ID:36561.1Re-query CCDS DB by GeneID:67236See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043716.8 ENSMUSP00000035245.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043716.8Link to Ensembl Protein Viewer:ENSMUSP00000035245.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043716Re-query CCDS DB by Protein ID:ENSMUSP00000035245
Original member Current member NCBI NM_026048.4 NP_080324.1 Accepted alive Link to Nucleotide Sequence:NM_026048.4Link to Protein Sequence:NP_080324.1Re-query CCDS DB by Nucleotide ID:NM_026048Re-query CCDS DB by Protein ID:NP_080324Link to BLAST:NP_080324.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080324.1 212 Q9D0V8-1 212 100% 0 0

Chromosomal Locations for CCDS 36561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 110873927 110874129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110876841 110876970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110879685 110879814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110883890 110884058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110889066 110889072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGAAGCAAAGACTCTTGGGATCGCAACACCAAGAAAACCTGTCTTATCAGTCAGTGCGAGGAAACTTA
AGGACAATGCTGCTGACTGGCATAACTTAATCCTGAAATGGGACAGCCTCAGTGACAAGGGCTTCACCAC
AGCGAGCAGTATTGCCAACCTGAAAGTCAGCTTGCTGAGTAAAGAGAAGGTTGAGTTAGAGAGCAGCAGC
CCAGCTTCCATGGAAGAGGAAGAAAAGACAAATCTGGACTACGATAAGGGACTCGAAGCACTGTGTGAGG
AGCTGCAGGCCATCTTGGACGGCTTGACTAAAATACAAATGAAAATGGAAAAGCTGTCTTCAACCACCAA
GGGAATTTGTGAGCTAGAAAATTACCACTACAGGGAAGAAAGCAGCCGGCCCCCTCTATTTCACACGTGG
CCCACAGCCTTCTTTTATGAGGTCTCCCGCCGGCTCTCTGAAGCATACAAGAAGGAGCTCCTTTTGAAGC
ACACCATTGGCGCAGAGCTGGCCCATACTGCAGATCGCAACCTCAGCCTGACCTACCTGTCCATGTGGCT
GCACCAGCCCTACATAGAGAGCAACAGCAAGCTGCAGCTGGAGAGCATGCTGCTCGAGACAGGTCACCGG
GCCCTGTGA

Translation (212 aa):
MEAKTLGIATPRKPVLSVSARKLKDNAADWHNLILKWDSLSDKGFTTASSIANLKVSLLSKEKVELESSS
PASMEEEEKTNLDYDKGLEALCEELQAILDGLTKIQMKMEKLSSTTKGICELENYHYREESSRPPLFHTW
PTAFFYEVSRRLSEAYKKELLLKHTIGAELAHTADRNLSLTYLSMWLHQPYIESNSKLQLESMLLETGHR
AL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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