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Report for CCDS28820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28820.1 Public Mus musculus 17 Rsph9 23 108 98 CCDS HistoryNCBI Gene:75564Re-query CCDS DB by CCDS ID:28820.1Re-query CCDS DB by GeneID:75564See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28820.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024762.2 ENSMUSP00000024762.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024762.2Link to Ensembl Protein Viewer:ENSMUSP00000024762.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000024762Re-query CCDS DB by Protein ID:ENSMUSP00000024762
Original member Current member NCBI NM_029338.4 NP_083614.1 Accepted alive Link to Nucleotide Sequence:NM_029338.4Link to Protein Sequence:NP_083614.1Re-query CCDS DB by Nucleotide ID:NM_029338Re-query CCDS DB by Protein ID:NP_083614Link to BLAST:NP_083614.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083614.1 276 Q9D9V4 276 100% 0 0

Chromosomal Locations for CCDS 28820.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46129338 46129498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46134973 46135119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46136742 46136871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46141547 46141712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46143922 46144148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGACGCCGACAGCCTCTTGTTGTCTCTGGAGTTGGCGTCTGGCAGTGGGCAGGGACTCAGCCCTGACC
GTCGGGCCTCACTGCTCACGTCCCTTATGCTGGTGAAGCGCGATTACCGCTTCGCGAGGGTCCTTTTCTG
GGGCCGCATCCTTGGCCTTGTGGCGGATTACTACATCGCACAGGGCTTGAGTGAGGACCAGCTCGCACCA
CGCAAGACGCTCTACAGCCTGAACTGCACAGAGTGGAGTCTCTTGCCCCCTGCCACAGAGGAGATGGCCA
TGCAGATATCTGTGGTGAGTGGCCGTTTCATGGGCGACCCTTCACACGAGTATGAACACACAGAGTTGCA
GAAGGTTAACGAAGGAGAGAAGGTCTTTGATGAAGAAGTGGTGGTCCAGATCAAGGAAGAGACTCGCTTG
GTGTCCATCATTGACCAGATTGACAAGGCTGTAGCTATCATCCCTCGAGGTGCCCTCTTCAAGACCCCTT
TTGGAGTCACCCATGTCAATCGGACCTTTGAAGGCCTGCCCCTGTCCGAGGTCAGGAAGCTTAGCTCGTA
CTTCCACTTCAGGGAGGCTATTGATCTGAAGAACAAGACCTTGCTGGAGAAGTCGGACTTGGAGCCCTCG
CTGGATTTCCTGGACTCCCTGGAATATGACATCCCCAGAGGGTCTTGGAGCATCCAGATGGAAAGGGGCA
ACGCACTGGTGGTGCTGCGCAGCCTGCTCTGGCCAGGCCTCACCTTCTACCACGCTCCTCGCACCAAGAA
CTATGGCTACATCTACGTAGGCACAGGAGAGAAGAACATGGACTTGCCCTTCATGCTGTAG

Translation (276 aa):
MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRFARVLFWGRILGLVADYYIAQGLSEDQLAP
RKTLYSLNCTEWSLLPPATEEMAMQISVVSGRFMGDPSHEYEHTELQKVNEGEKVFDEEVVVQIKEETRL
VSIIDQIDKAVAIIPRGALFKTPFGVTHVNRTFEGLPLSEVRKLSSYFHFREAIDLKNKTLLEKSDLEPS
LDFLDSLEYDIPRGSWSIQMERGNALVVLRSLLWPGLTFYHAPRTKNYGYIYVGTGEKNMDLPFML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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