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Report for CCDS19593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19593.1 Public Mus musculus 5 Pxn 23 108 98 CCDS HistoryNCBI Gene:19303Re-query CCDS DB by CCDS ID:19593.1Re-query CCDS DB by GeneID:19303See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067268.14 ENSMUSP00000069624.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067268.14Link to Ensembl Protein Viewer:ENSMUSP00000069624.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000067268Re-query CCDS DB by Protein ID:ENSMUSP00000069624
Original member NCBI NM_011223.3 NP_035353.1 Updated not alive Link to Nucleotide Sequence:NM_011223.3Link to Protein Sequence:NP_035353.1Re-query CCDS DB by Nucleotide ID:NM_011223Re-query CCDS DB by Protein ID:NP_035353
Current member NCBI NM_011223.4 NP_035353.1 Accepted alive Link to Nucleotide Sequence:NM_011223.4Link to Protein Sequence:NP_035353.1Re-query CCDS DB by Nucleotide ID:NM_011223Re-query CCDS DB by Protein ID:NP_035353Link to BLAST:NP_035353.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035353.1 557 Q8VI36-2 557 100% 0 0

Chromosomal Locations for CCDS 19593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115506856 115506868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115544343 115544569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115544881 115544996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115545372 115545508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115545604 115545805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115546813 115546948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115551851 115552021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115552104 115552277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115552764 115552845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115552978 115553126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115553869 115554135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGACGACCTCGATGCCCTGCTGGCAGACTTGGAATCTACCACCTCCCACATCTCCAAACGGCCAGTGT
TCTTGTCAGAGGAGCCCCCCTACTCCTACCCAACTGGAAACCACACATACCAGGAGATTGCGGTGCCACC
TCCGGTCCCACCACCACCGTCCAGCGAGGCCCTCAATGGCACGGTCCTGGACCCTTTAGATCAGTGGCAG
CCTAGTGGTTCCAGATACGCTCACCAGCAGCCTCCGTCCCCACTGCCCGTGTACAGCTCCAGTGCTAAAA
ATTCCAGTGCCTCCAACACCCAGGACGGCGTGGGCTCCCTTTGTTCCCGAGCAGGCGAGGAAGAGCACGT
CTACAGCTTCCCCAACAAGCAGAAGTCGGCAGAGCCCTCACCTACCGTCATGAGCTCCTCCCTGGGCAGC
AACCTCTCTGAACTTGACCGGCTGTTACTGGAGCTGAACGCAGTGCAGCACAGCCCGCCTGGCTTCCCTG
CAGATGAAGCCGAATCGAGCCCCCCCTTGCCTGGAGCCCTGAGCCCCCTTTATGGCATCCCAGAAAATAA
CACTCCCTTGGGGGGCAAAGCGGGGCCCCTGGTGAAAGAGAAGCCAAAGCGAAATGGAGGCCGGGGGCTG
GAGGATGTGCGGCCCAGCGTGGAGAGCCTCTTGGATGAACTGGAGAGTTCCGTGCCCAGCCCTGTCCCGG
CCATCACTGTGAACCAGGGAGAGATGAGCAGTCCGCAGCGAGTCACCTCCAGCCAGCAGCAGACCCGGAT
CTCGGCCTCCTCTGCCACCAGGGAGCTGGACGAGCTCATGGCGTCACTGTCAGATTTCAAGTTCATGGCC
CAGGGGAAAACTGGGAGCAGCTCACCCCCTGGGGGACTCTCCAAGCCCGGGAGCCAGCTGGACAGCATGT
TGGGGAGTCTGCAGTCCGACCTGAACAAGCTAGGGGTCGCCACCGTTGCCAAAGGGGTCTGTGGAGCCTG
CAAGAAGCCCATCGCCGGGCAGGTCGTGACCGCCATGGGGAAGACATGGCACCCCGAGCACTTTGTGTGC
ACCCACTGCCAGGAGGAGATTGGATCCCGAAACTTTTTTGAGCGGGACGGACAGCCCTACTGTGAGAAGG
ACTACCACAGCCTCTTCTCCCCACGCTGCTACTACTGCAACGGACCCATCCTGGATAAAGTGGTGACAGC
GCTGGACCGCACATGGCACCCGGAACACTTCTTCTGTGCCCAGTGTGGAGCCTTCTTTGGTCCAGAAGGC
TTCCACGAGAAGGACGGCAAAGCGTACTGTCGTAAAGATTACTTCGACATGTTTGCTCCCAAGTGCGGCG
GCTGCGCCCGTGCCATCCTGGAGAACTACATTTCAGCCCTCAACACCCTCTGGCACCCCGAATGCTTTGT
GTGCAGGGAGTGCTTCACACCCTTCGTCAACGGCAGCTTCTTTGAGCACGACGGGCAGCCGTACTGTGAG
GTCCACTACCACGAGCGGCGCGGCTCGCTGTGCTCCGGCTGCCAGAAGCCCATCACGGGCCGCTGCATCA
CCGCCATGGCCAAGAAGTTCCACCCCGAGCATTTCGTGTGCGCCTTTTGCCTGAAGCAGCTCAACAAGGG
CACCTTCAAGGAGCAGAACGACAAACCCTACTGCCAGAGCTGCTTCGTGAAGCTCTTCTGCTAG

Translation (557 aa):
MDDLDALLADLESTTSHISKRPVFLSEEPPYSYPTGNHTYQEIAVPPPVPPPPSSEALNGTVLDPLDQWQ
PSGSRYAHQQPPSPLPVYSSSAKNSSASNTQDGVGSLCSRAGEEEHVYSFPNKQKSAEPSPTVMSSSLGS
NLSELDRLLLELNAVQHSPPGFPADEAESSPPLPGALSPLYGIPENNTPLGGKAGPLVKEKPKRNGGRGL
EDVRPSVESLLDELESSVPSPVPAITVNQGEMSSPQRVTSSQQQTRISASSATRELDELMASLSDFKFMA
QGKTGSSSPPGGLSKPGSQLDSMLGSLQSDLNKLGVATVAKGVCGACKKPIAGQVVTAMGKTWHPEHFVC
THCQEEIGSRNFFERDGQPYCEKDYHSLFSPRCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEG
FHEKDGKAYCRKDYFDMFAPKCGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFEHDGQPYCE
VHYHERRGSLCSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQSCFVKLFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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