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Report for CCDS17031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17031.1 Public Mus musculus 2 Svs6 23 108 98 CCDS HistoryNCBI Gene:20945Re-query CCDS DB by CCDS ID:17031.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17031.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017144.2 ENSMUSP00000017144.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017144.2Link to Ensembl Protein Viewer:ENSMUSP00000017144.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017144Re-query CCDS DB by Protein ID:ENSMUSP00000017144
Original member Current member NCBI NM_013679.2 NP_038707.2 Accepted alive Link to Nucleotide Sequence:NM_013679.2Link to Protein Sequence:NP_038707.2Re-query CCDS DB by Nucleotide ID:NM_013679Re-query CCDS DB by Protein ID:NP_038707Link to BLAST:NP_038707.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038707.2 99 Q64356 99 98.9899% 0 1

Chromosomal Locations for CCDS 17031.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164316768 164316843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164317306 164317352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164317442 164317618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGAGTCCCACCAGCTTCTTTCTCCTTACAATGCTCCTTGTTCTGGTGACAGAAACAGCTGCAAAGAGGC
CCCGTGAAAGGTTCTCGCAAGCAATTGAAGAGTTTTCTAGTGAAAGTTCTGAAGCAAATAGTCCAAAAAG
CATTGTCCATGAGGAGGTTTATGAGGAAAAGAAGTTTAAACGGAATATGGTCAATGGTGAAGATGGGGAA
GACAGCAAGAGAGCATCTGCAGGGGAGATAGAGCGGTCTTACTTGCGGAAAAAGGAGAAGCAACAGTTTG
CACAAGAAATGGATAAATAA

Translation (99 aa):
MSPTSFFLLTMLLVLVTETAAKRPRERFSQAIEEFSSESSEANSPKSIVHEEVYEEKKFKRNMVNGEDGE
DSKRASAGEIERSYLRKKEKQQFAQEMDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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