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Report for CCDS25095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25095.1 Public Mus musculus 11 Supt6 23 108 98 CCDS HistoryNCBI Gene:20926Re-query CCDS DB by CCDS ID:25095.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002121.4 ENSMUSP00000002121.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002121.4Link to Ensembl Protein Viewer:ENSMUSP00000002121.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000002121Re-query CCDS DB by Protein ID:ENSMUSP00000002121
Original member Current member NCBI NM_009297.2 NP_033323.2 Accepted alive Link to Nucleotide Sequence:NM_009297.2Link to Protein Sequence:NP_033323.2Re-query CCDS DB by Nucleotide ID:NM_009297Re-query CCDS DB by Protein ID:NP_033323Link to BLAST:NP_033323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033323.2 1726 Q62383 1726 100% 0 0

Chromosomal Locations for CCDS 25095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78207583 78207769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78208050 78208237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78208852 78209018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78209102 78209179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78209424 78209536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78211797 78211921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78212083 78212196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78212669 78212907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78213267 78213462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78216205 78216345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78217841 78217983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78219168 78219315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78219883 78220090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78221121 78221248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78222110 78222277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78222348 78222485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78222770 78222905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78223154 78223230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78224366 78224483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78224596 78224735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78225307 78225502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78225664 78225818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78225947 78226097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78226180 78226309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78226675 78226773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78226891 78227039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78228629 78228771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78228954 78229043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78229397 78229513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78230166 78230267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78230928 78231201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78231773 78231857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78232018 78232210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78232505 78232581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78232675 78232833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78233545 78233653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5181 nt):
ATGTCTGATTTTGTGGAAAGTGAGGCCGAAGAGTCAGAAGAAGAATACAATCATGAAGGCGAGGTGGTAC
CT
AGAGTCACCAAGAAGTTTGTGGAAGAGGAGGATGATGATGAGGAGGAGGAAGAGGAGAATCTAGATGA
T
CAAGATGAGCGAGGCAACCTCAAAGACTTTATCAATGACGATGATGATGAAGAAGAAGGGGAGGAGGAT
GAG
GGCAGCGACTCTGGGGACTCAGAAGACGATGTTGGCCACAAGAAGAGAAAACGCCCATCTTTTGATG
AC
CGCCTGGAAGATGATGATTTTGACCTCATTGAGGAGAATTTGGGTGTTAAAGTCAAACGAGGACAAAA
A
TACCGACGTGTCAAAAAAATGTCTGATGATGATGAAGATGATGAAGAGGAATATGGCAAAGAGGAACAC
GAG
AAGGAGGCCATTGCAGGGGAAATCTTCCAAGATGAAGAAGGGGAAGAAGGCCAGGAGGCTGTAGAGG
CC
CCCATGGCCCCTCCTGACGAGGAGGAGGAAGATGATGAGGAGTCAGACATTGACGATTTCATTGTGGA
T
GATGATGGACAGCCTCTGAAAAAACCCAAATGGCGAAAAAAGCTCCCTGGATATACAGATGCAGCCCTG
CAG
GAAGCCCAGGAGATCTTCGGTGTGGACTTTGACTATGATGAATTTGAGAAATACAATGAATACGATG
AA
GAACTGGAAGAAGACTATGAGTACGAGGATGATGAGACTGAAGGTGAGATCCGAGTGCGCCCCAAGAA
G
ACCACCAAGAAACGTGTGAGTCGCAGGAGCATCTTTGAGATGTACGAGCCTAGTGAGCTGGAGAGCAGC
CAC
CTCACAGACCAGGACAATGAAATCCGAGCCACTGACTTGCCTGAGAGGTTCCAGCTCCGCTCCATCC
CA
GTCAAGGCAGCTGAGGATGATGAGCTAGAAGAGGAAGCTGACTGGATCTATAGAAATGCCTTCGCAAC
A
CCGACCATCTCCCTCCAGGACAGCTGTGATTACCTAGACCGTGGGCAGCCAACTAGTAGCTTCAGTCGT
AAA
GGGCCCAGCACAGTTCAGAAGATCAAAGAGGCCCTGGGCTTCATGCGGAATCAGCATTTTGAGGTGC
CT
TTCATTGCCTTCTACCGAAAGGAGTATGTGGAACCTGAGCTGCACATCAATGACCTGTGGAGGGTGTG
G
CAGTGGGATGAGAAGTGGACTCAGCTGAGAATCCGCAAAGAGAACCTAACACGGCTGTTTGAGAAGATG
CAG
GCTTATCAGTATGAGCAAATCTCTGCTGACCCTGACAAACCTCTTGCTGACGGCATCCGGGCTCTAG
AT
ACTACTGACATGGAGAGGCTCAAAGATGTTCAGTCAATGGATGAACTGAAAGACGTCTACAACCATTT
C
TTACTTTACTACGGGCGTGACATCCCCAAGATGCAGAATGCTGCCAAGGCTAGCCGGAAGAAGCTGAAA
CGC
ATAAAGGAGGATGGCGATGAAGAAGGTGAAGGTGAGGAGGCTGAAGATGAGGAACAGAGGGGACCAG
AG
CTCAAGCAAGCCTCCCGCCGAGACATGTATACCATCTGCCAGAGTGCCGGGCTAGATGGCCTGGCCAA
A
AAGTTTGGCCTCACACCTGAGCAGTTTGGGGAGAACCTCCGTGACAGCTACCAGCGCCACGAGACAGAG
CAG
TTCCCTGCAGAGCCTTTGGAGCTGGCCAAAGATTACGTGTGCAGCCAGTTCCCTACACCAGAAGCTG
TG
CTTGAAGGTGCCCGATACATGGTTGCACTACAGATTGCCAGGGAGCCCCTTGTCAGACAGGTGCTGAG
A
CAAACCTTTCAGGAGAGAGCCAAGCTAAACATAACCCCAACCAAGAAAGGTAGAAAGGATGTGGATGAG
GCC
CACTACGCTTACTCTTTTAAGTACTTAAAGAACAAGCCTGTTAAAGAGCTGAGAGACGACCAGTTCC
TC
AAGATAGGCCTGGCTGAGGATGAAGGGCTGCTCACCATTGACATCAGCATAGATATGAAGGGAGTGGA
A
GGGTATGGTAATGACCAGACATATTTTGAGGAGATCAAGCAGTTTTACTACCGGGATGAGTTCAGCCAC
CAA
GTACAGGAATGGAACCGGCAGCGCACTATGGCCATTGAGCGAGCTCTGCAGCAGTTCCTCTACGTGC
AA
ATGGCCAAAGAACTTAAGAACAAGCTGCTAGCTGAGGCCAGGGAGAGTGTTGTGAAGGCCTGTAGCCG
A
AAGCTCTACAACTGGTTGAGAGTGGCACCCTACCGTCCAGATCAGCAGGTAGAGGAGGACGACGACTTT
ATG
GATGAGAACCAGGGGAAGGGCATCCGAGTCCTAGGCATTGCTTTCTCCTCTGCCAGAGATCACCCTG
TG
TTCTGTGCCCTAGTCAATGGTGAAGGAGAAGTGACTGATTTCCTCCGCCTGCCCCATTTTACCAAGCG
G
CGAACTGCATGGAGAGAAGAGGAGCGGGAAAAGAAGGCTCAAGATATTGAAACCCTAAAGAAGTTTCTT
GTG
AATAAGAAGCCTCATGTGGTCACTATCGCAGGAGAGAACAGGGATGCCCAGATGCTGACTGAGGATG
TG
AAGCGGATAGTGCATGAGCTGGACCAAGGCCAACAGCTGTCTTCTATTGGGGTGGAGCTGGTTGACAA
T
GAGCTGGCCATTCTGTACATGAACAGCAAGAAATCAGAGGCAGAGTTCCGGGATTATCCACCAGTTTTG
AGA
CAAGCTGTCTCTCTAGCCCGGCGTATCCAAGACCCTCTGATAGAATTTGCCCAGGTGTGCAGCTCAG
AT
GAAGACATCCTGTGTCTCAAGTTTCATCCCTTGCAGGAGCATGTTGTGAAAGAGGAGCTGCTTAACGC
C
TTGTACTGTGAATTCATCAACCGGGTCAATGAGGTCGGGGTGGATGTCAACCGTGCCATTGCCCATCCT
TAC
AGCCAGGCCTTGATCCAGTATGTCTGTGGCCTGGGACCCCGAAAAGGGACCCACCTGCTGAAGATTT
TG
AAACAGAACAACACTCGACTCGAGAGCCGGACTCAGCTGGTCACCATGTGTCATATGGGTCCCAAAGT
C
TTCATGAATTGTGCTGGCTTCCTCAAGATCGACACTGCTTCTCTGGGGGACAGCACTGACTCATACATT
GAA
GTTCTTGATGGCTCTCGAGTCCACCCTGAAACGTACGAGTGGGCCAGGAAGATGGCAGTGGATGCCT
TA
GAATACGATGAGTCTGCAGAAGATGCCAATCCTGCTGGAGCCCTTGAGGAAATCTTGGAAAACCCAGA
G
CGGCTGAAGGATTTAGATCTTGATGCCTTTGCAGAAGAACTAGAGAGACAGGGCTATGGTGACAAGCAC
ATC
ACACTGTATGACATCCGAGCAGAGCTCAGTTGTAGGTATAAGGACCTCCGGACAGCCTACCGCTCTC
CT
AACACAGAGGAGATCTTCAATATGTTAACCAAAGAGACGCCAGAGACCTTCTACATTGGAAAGCTTAT
C
ATCTGCAATGTTACCGGCATTGCTCACAGGCGCCCACAGGGTGAGAGCTATGACCAGGCCATCCGAAAT
GAT
GAGACAGGGCTGTGGCAGTGCCCCTTCTGTCAACAAGACAACTTCCCTGAGCTAAGCGAGGTCTGGA
AC
CATTTTGACAGTGGATCATGCCCTGGTCAGGCCATTGGTGTGAAAACACGGCTAGACAATGGCGTCAC
C
GGCTTCATCCCTACCAAATTCCTCAGTGACAAGGTGGTGAAGAGGCCAGAGGAGCGAGTGAAGGTGGGG
ATG
ACTGTTCACTGCCGGATCATGAAGATCGATATTGAAAAGTTCAGTGCAGACCTGACCTGCCGGACCT
CA
GACCTCATGGACAGGAACAATGAGTGGAAACTGCCCAAGGACACCTACTATGACTTTGATGCGGAAGC
T
GCAGACCACAAGCAGGAAGAGGATATGAAACGAAAGCAGCAGCGGACCACATACATCAAGCGAGTGATT
GCA
CACCCGTCCTTCCATAACATAAATTTCAAGCAAGCAGAAAAGATGATGGAGACCATGGACCAAGGGG
AT
GTTATCATTCGGCCCAGCAGTAAAGGTGAAAACCATCTGACGGTGACCTGGAAAGTCAGTGCTGGCAT
C
TACCAGCACGTGGACGTGCGGGAAGAGGGCAAGGAGAACGCCTTCAGCCTGGGAGCCACTCTTTGGATC
AAC
AGTGAGGAATTTGAAGACTTGGATGAGATTGTTGCCCGCTATGTCCAGCCCATGGCTTCCTTTGCTC
GA
GACCTTCTGAACCACAAATATTACCAGGACTGTAGTGGTGGGGACCGAAAGAAATTAGAGGAGCTGCT
C
ATCAAAACTAAGAAGGAGAAGCCCACCTTCATCCCTTACTTCATCTGTGCCTGCAAGGAGCTGCCCGGC
AAG
TTCCTCCTGGGATACCAGCCCCGGGGTAAACCCAGGATAGAATATGTAACAGTGACTCCTGAAGGAT
TC
CGGTACCGGGGCCAGATTTTCCCAACTGTGAATGGACTCTTCAGGTGGTTTAAGGATCACTATCAGGA
T
CCTGTACCAGGCATCACTCCCAGTAGCAGTAACAGAACACGGACCCCTGCTTCTATCAATGCTACCCCA
GCC
AACATCAATCTTGCAGATCTCACACGGGCTGTGAATGCCTTGCCTCAGAACATGACTTCACAGATGT
TC
AGTGCCATTGCTGCTGTGACAGGCCAGGGGCAGAACCCCAATGCTACCCCAGCCCAGTGGGCATCCAG
C
CAGTATGGCTACGGTGGCAGCGGAGGAGGCAGCAGCGCCTACCATGTGTTCCCAACACCAGCCCAGCAG
CCA
GTGGCCACACCACTAATGACCCCAAGCTACTCCTATACTACCCCGAGCCAGCCCATTACCACCCCAC
AA
TACCACCAGCTCCAGGCCAGCACCACCCCACAGTCTACACAGGCCCAGCCCCAGCCTTCCTCCAGCTC
C
CGACAACGGCAACAGCAGCCAAAGTCCAACAGCCATGCAGCTATCGACTGGGGCAAGATGGCCGAGCAG
TGG
CTACAGGAAAAGGAGGCAGAACGACGGAAACAGAAACAGCGGCTGACCCCACGACCCTCTCCCAGCC
CC
ATGATCGAGAGCACCCCCATGTCCATTGCTGGCGATGCGACCCCACTCCTGGACGAGATGGATCGGTA
G


Translation (1726 aa):
MSDFVESEAEESEEEYNHEGEVVPRVTKKFVEEEDDDEEEEEENLDDQDERGNLKDFINDDDDEEEGEED
E
GSDSGDSEDDVGHKKRKR
PSFDDRLEDDDFDLIEENLGVKVKRGQKYRRVKKMSDDDEDDEEEYGKEEH
E
KEAIAGEIFQDEEGEEGQEAVEAPMAPPDEEEEDDEES
DIDDFIVDDDGQPLKKPKWRKKLPGYTDAAL
Q
EAQEIFGVDFDYDEFEKYNEYDEELEEDYEYEDDETEGEIRVRPKKTTKKRVSRRSIFEMYEPSELESS
H
LTDQDNEIRATDLPERFQ
LRSIPVKAAEDDELEEEADWIYRNAFATPTISLQDSCDYLDRGQPTSSFSR
K
GPSTVQKIKEALGFMRNQHFE
VPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKM
Q
AYQYEQISADPDKPLADGIRALDTTDME
RLKDVQSMDELKDVYNHFLLYYGRDIPKMQNAAKASRKKLK
R
IKEDGDEE
GEGEEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETE
Q
FPAEPLELAKDYVC
SQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPTKKGRKDVDE
A
HYAYSFKYLKNKPVKELRDDQFLKIGLAEDEGLLTIDISIDMKGVE
GYGNDQTYFEEIKQFYYRDEFSH
Q
VQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEARESVVK
ACSRKLYNWLRVAPYRPDQQVEEDDDF
M
DENQGKGIRVLGIAFSSA
RDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFL
V
NKKPHVVTIAGEN
RDAQMLTEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVL
R
QAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQ
EHVVKEELLNALYCEFINRVNEVGVDVNRAIAHP
Y
SQALIQYVCGLGPRKGTHLLK
ILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYI
E
VLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELERQ
GYGDKH
I
TLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYI
GKLIICNVTGIAHRRPQGESYDQAIRN
D
ETGLWQCPFCQQDNFPELSE
VWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVG
M
TVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRT
TYIKRVI
A
HPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSAGIYQHVDVREEGKENAFSLGATLWI
N
SE
EFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELPG
K
FLLGYQPRGKP
RIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSNRTRTPASINATP
A
NINLA
DLTRAVNALPQNMTSQMFSAIAAVTGQGQNPNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQ
P
VATPLMTPSYSYTTPSQPITTPQYHQLQASTTPQSTQAQPQPSSSSRQRQQQP
KSNSHAAIDWGKMAEQ
W
LQEKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser