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Report for CCDS24054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24054.1 Public Mus musculus 10 Gipc3 23 108 98 CCDS HistoryNCBI Gene:209047Re-query CCDS DB by CCDS ID:24054.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24054.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045102.6 ENSMUSP00000049236.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045102.6Link to Ensembl Protein Viewer:ENSMUSP00000049236.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045102Re-query CCDS DB by Protein ID:ENSMUSP00000049236
Original member NCBI NM_148951.2 NP_683753.1 Updated not alive Link to Nucleotide Sequence:NM_148951.2Link to Protein Sequence:NP_683753.1Re-query CCDS DB by Nucleotide ID:NM_148951Re-query CCDS DB by Protein ID:NP_683753
Current member NCBI NM_148951.3 NP_683753.1 Accepted alive Link to Nucleotide Sequence:NM_148951.3Link to Protein Sequence:NP_683753.1Re-query CCDS DB by Nucleotide ID:NM_148951Re-query CCDS DB by Protein ID:NP_683753Link to BLAST:NP_683753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683753.1 297 Q8R5M0 297 100% 0 0

Chromosomal Locations for CCDS 24054.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81337883 81338034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81338197 81338278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81340264 81340376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81341188 81341368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81341491 81341676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81343078 81343257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGACAGTGCTGCGCCCCGCGAGCCCGGGGCCACCGAGCCCCCCGCCCGCGCGCGCCCGCGCCTAGTGT
TCCGCACGCAGCTGGCGCACGGCAGTCCGACCGGCAGGATCGAGGGCTTCACCAATGTCCGCGAGCTTTA
CGCCAAGATCGCCGAGGCCTTCGGCATCGCTCCTACCGAGATCCTATTCTGCACCCTCAACAGTCACAAA
GTGGACATGCAAAAGTTGCTGGGGGGACAGATTGGGCTGGAAGACTTCATCTTTGCACATGTGCGTGGAG
AGACCAAAGAAGTGGAGGTCACCAAAACGGAGGATGCTCTAGGACTGACCATCACAGACAACGGAGCCGG
ATACGCCTTCATCAAGAGAATCAAGGAAGGCAGCATTATCAACCGGATTGAGGCTGTGTGCGTGGGGGAT
AGCATTGAGGCCATCAATGACCACTCTATTGTGGGCTGCCGGCACTACGAGGTGGCTAAAATGCTCCGGG
AGCTGCCCAAGTCTCAGCCCTTCACCCTGCGTCTAGTGCAGCCCCGGAGAGCTTTTGATATGATTGGCCA
GAGGAGCAGGAGCAGCAAGTGTCCTGTGGAAGCTAAAGTGAGCAGCGGGAGGGAAACATTACGCCTGCGC
TCAGGGGGGGCTGCCACTGTGGAGGAGGCGCCCAGCGATGTGGAAGCGGCAGCGGCGCGCAGGGTGGACG
ACCTGCTGGAGAGCTACATGGGCATCCGAGACCCCGAGCTGGCGGCCGCGGTGGTGGAGACTGCTCGGAG
CTCGGCGGGAGCCCAGGCTTTCGCACGCGGCCTGGACGCCGTTCTGGGCGAGTTCGCCTTTCCAGACGAG
TTCGTGGTGGAGGTGTGGGCAGCTATCGGCGAGGCCCACGACGCTTGTGGCTAG

Translation (297 aa):
MDSAAPREPGATEPPARARPRLVFRTQLAHGSPTGRIEGFTNVRELYAKIAEAFGIAPTEILFCTLNSHK
VDMQKLLGGQIGLEDFIFAHVRGETKEVEVTKTEDALGLTITDNGAGYAFIKRIKEGSIINRIEAVCVGD
SIEAINDHSIVGCRHYEVAKMLRELPKSQPFTLRLVQPRRAFDMIGQRSRSSKCPVEAKVSSGRETLRLR
SGGAATVEEAPSDVEAAAARRVDDLLESYMGIRDPELAAAVVETARSSAGAQAFARGLDAVLGEFAFPDE
FVVEVWAAIGEAHDACG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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