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Report for CCDS88294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88294.1 Public Mus musculus 11 Ccdc40 23 108 98 CCDS HistoryNCBI Gene:207607Re-query CCDS DB by CCDS ID:88294.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000236813.1 ENSMUSP00000158069.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236813.1Link to Ensembl Protein Viewer:ENSMUSP00000158069.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236813Re-query CCDS DB by Protein ID:ENSMUSP00000158069
Original member NCBI NM_001364767.1 NP_001351696.1 Updated not alive Link to Nucleotide Sequence:NM_001364767.1Link to Protein Sequence:NP_001351696.1Re-query CCDS DB by Nucleotide ID:NM_001364767Re-query CCDS DB by Protein ID:NP_001351696
Current member NCBI NM_001364767.2 NP_001351696.1 Accepted alive Link to Nucleotide Sequence:NM_001364767.2Link to Protein Sequence:NP_001351696.1Re-query CCDS DB by Nucleotide ID:NM_001364767Re-query CCDS DB by Protein ID:NP_001351696Link to BLAST:NP_001351696.1

Chromosomal Locations for CCDS 88294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119229134 119229162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119230625 119230694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119231473 119232288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119234652 119234796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119236144 119236298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119237864 119237947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119238029 119238248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119242427 119242584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119242713 119242835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119242997 119243118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119245835 119246078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119246168 119246350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119250939 119251184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119251803 119252016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119253250 119253419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119253620 119253711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119254342 119254462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119259855 119260043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119263075 119263233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119264266 119264514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3789 nt):
ATGGCGGAGCCGGAGGACCAGGCTGACGGGTCACAGCAGGAAGGCCAACAGTCTTCTGCCGAAGAGGACT
CGGAGCAGCAGTATACTGAAGGCCCTGAGGTATCACCACAGCTGGAAGACAATGGCCAAGAAATTGATGA
GGGCAGAGACCCCACCAGAAGTCCTGAAGAGGACATTACAACTGAAGGCGGGGGCGGATCTGAAGGGGAA
ATGATGGATGCTGAGAAAGTCAGCACGGATGGGGAAGCCATCTCTGAAGGAGAAGTGGGGTCCAATGGAG
AGACTCCCCCAGAAACAGAAGTGGAATTCATTGGAGAGACCGCTCCAGACACAGATGTGGAATTCATTGG
AGAGACCTCCCCAGGAACAGACGTGGAACCCACTGGAGAGAGCATACAGGAAACAGAAGTTGAATCCATC
GGAGAGGCTACCCCAGGAATGGACGTGGAACCCATTAAAAAGACCATGACAGAACTCAACGTTGAATCCA
TCGGAGAAGAAACCTCAGAAACAGACGTGGACTCCATTAGGAAGGCCCTCCGAGGAATAGACTTGGAATC
TATCACAGTTGCCTATCCGCCAAAAAAGGCTAAACACAGAAAGGTCAGACCCCAAGCGGAAGTTGAATCC
ACTGGAAGAGCTGCCCCAGAAGGAGAATTAGAAGTTTCTGACCACGAGAAAGTAGAAGCCCTTCTCGATG
AGTTGGATGAGCTCTCTGAGATAGTCAGCTCTCCCGAGGTCTCCTACTCTGACATCAGTCCCTTGGAGAT
GGGTGAAGATGACACAAACGTCTCAGCCACATCAACCGACACATTCCAGCAAGGCATATATGAGCCCATA
GAACCCATAGAGCCCACAGAGCCCCCAGAGCCTGCAGAGCCCCCAAAGCCTGCAGAGACCCCAGAGGACA
GCACGGTGAGAGCCCCAGCGCATCCCTATCAAAGAGACTTCCCAATGGGGGCACGACACCGATTCAGACT
GAGCATCATGGGAAGTCTGACTCCCTCGGACACGGACGATCTTCCCCTGGAAACGGACGAGCCGCCTCAG
CAAGAGTCAGTGCAGTCAACTCCCAGAGCCCTTGAAGAAACCCGGATACAGTTCCTAGACCAGGTCCAGA
GCCTCAGCCCGGAGGCCCTGCTCGATAGAGCAACTGAAGGGAGTGATGAAGCAGAGGAGGAAGGCTCCCA
GCTGATCGTGCTGGACCCAGACCATCCTCTGATGATCAGATTCCAGGAGGCTCTGAAGGGCTACCTCAAC
CGGCAGATGGACAAACTGAAGCTGGACGTCCAAGAGCTGGATGTGGCCACCAAGCAAACCCGAAGCCAGA
GGCAGGAGCTGGGCGTGAACCTCTACGGGGTCCAGCAGCACCTGGCCCGCCTGCAGATGCAGCTGGAGAA
GAGCCATGACCGGCACTCTCTGGTGGCCTGTGAGCGGAGAAGGAAGGAGGAGGAGCTGCAATGCGCACGC
TCCGTCTACAACAAGACCTGCCAGACCGCCAATGAGGAACGAAAGAAGTTGGCCGCCCTGCAGACAGAGG
TGGAGAGCCTGGCCCTGCACCTCTTCTACATGCAGAACATAGAGCAGGACGTGCGCGATGACATCCAAGT
CATGAAGCAGGTGGTGAGGAAGACCGAGACGGAGAAGATGCACGCCGAGGTGGAGAAGAAAAAGCAGGAC
CTGTTTGTGGACCAGCTCACCGAAAGGTCACACCAGCTAGAAGAAAACATCGCCCTGTTTGAGGCTCAAT
ACTTGTCCCAGGCTGAGGACACCCGGGTCCTCAAGAAAGCAGTGACTGAGGCCATCACAGAGATTGACAC
CATTGCCGTGGAGAAGAAGCGAATCCTACAGCAGTGGACCACCAGCCTAGTGGGCATGAAGCACCGTAAC
GAGGCATACAAGACAGTGATGGATGCGCTCAGGGAGTGTCAGCATCAGGTGAAGTCCACCGACAGTGAGA
TCGAAGTCTGCAAGAAGTCCATCATGCAGGAGGAAGAGAAGAATGAGAAGCTGGCCCGTCTCCTGAACCG
CGCAGAGACAGAAGCCACACTGGTGCAGAAAATGACCGCCCAGTGCTTAAGCAAGCAAGAGGCTCTGCAG
ACGGAGTTTAACACGTACCAGCTCGCCCTGCAGGACACGGAGGAGATGCTGAACAAGGGCTATGTGGAAC
ACTCGGCAGTCTTGAGCGAGCTCCAGGCCACACGCCAGGCTTTCCACCAGGAACAGGAGCTACGGCAAAA
GATGGACATGTCCATGGTGGACAAGCTGCAGGAACAGGGGACCTCCAGCAAGATGACCAAGTACTTTCAT
CAGCTCCTTCGGAAGCTGCAAAAGGAAAACACCAACCTGGTGACACATCTTTCAAAAATTGACGGCGATA
TCGCCCAGGCCACCCTGGACATCACCAACACCAACTGCAAAATAGACATGCATAAGAAGACGCTGGCAGA
GATGGACAAGGAGGTAAAGAGGTTCAACGATCTCATCACCAACAGCGAGAGCGAGATCGCCCGGCGCACC
ATCCTCATTGAGAGGAAGCAGAGCCTCATCAACTTCTTCAACAAGCAGCTGGAACAGATGGTGTCGGAGC
TGGGGGGGGAAGAAGCTGGACCCCTGGAACTGGAGATCAAAAGGCTGTCGAAGCTGACAGAAGAGTACAA
CACGGGAGTGGCTGAGGCGCAGATGACCTGGTTGCGCCTGCAGCAGGAACTGGTCCAGGTCACGCATGAG
CGCGAGGAGCAGCTGGTGTCCGTGGACCAACTGAAGAAGGAGGTGCACATCATGGAACAAAAGAAGCTTC
GCATAGAGAGCAAGATTGCACATGAGAAGAAGGAACAAAAGATAGTGAGCCGCCACATGAGGGACCTGGA
CAACGACCTGAGCAAGCTCAACATGCTGTTGGACAAGAACCGATGCAGTTCGGAAGAGCTGGAGCAGAAC
AATATAGCAACTGAGACGGAGTTTCTGCGCACGCTGAAGGACTCAGAAAGAGAGACCATTCAAATGCAGG
AAAAGCTGATGGAACTCTCTGAGGAAAAGGCCACCCTCCTCAACAGCTTCATGGAGGCAGAGCACCAAAT
CATGCTGTGGGAGAAGAAAATCCAACTGGCCAAGGAGATGCGCAGCTCGGTGGATTCTGAGACCGGGCAG
ACAGAGATCCGTGCTATGAAGGCCGAGATCCACAGGATGAAGGTTAGGCACGGGCAGCTACTGAAGCAGC
AGGAGAAGATGATCCGTGACATGGAGTTGGCTGTGGCCCGCAGGGAGACCATCGTCGTCCAGGCTGAAGG
GCAGAGCAAGATAGACAAGAAAGTAATCACCAAGACAGAGTTCCACTACCAGCAGCGCGAGCTGCAGAAG
AAAGTCAGGGAGATGCACAAGGCCACAGATGACTGCACCAACACCATCTCAGAACTGGAAGAAACTCAAA
AGTTCCTAAGCAGCTCCCTCCAGGAGAAGCAGCAACTGCTGTCAGAAATGCAGGCTACCACAGATGTTCT
TGAAGAGGAGATCAACCAGCTAACAGCTCTCAAACGGCAGAACCTTCTGGAGATCGTGACCCTGCAGACC
CGTGGCAAGCACCTGCAGGCCGCCATTGAGGGGAAATATGTGTTCCTGCACCGCAACAGCAGGTCCCAGC
TGATGGAGCGTAAGCGCCTGAGCGTCCGGCTGTCCCAGCTCAACAAGGTCCTCTCCAGCGTGCAGGAAGA
CTACCCCCAGTACCAGGAGGTGCTGCAGAGCATTCAACAGAAGATCGCCACCAAGCTGGAGACCCCAGAG
CCCTCCTAG

Translation (1262 aa):
MAEPEDQADGSQQEGQQSSAEEDSEQQYTEGPEVSPQLEDNGQEIDEGRDPTRSPEEDITTEGGGGSEGE
MMDAEKVSTDGEAISEGEVGSNGETPPETEVEFIGETAPDTDVEFIGETSPGTDVEPTGESIQETEVESI
GEATPGMDVEPIKKTMTELNVESIGEETSETDVDSIRKALRGIDLESITVAYPPKKAKHRKVRPQAEVES
TGRAAPEGELEVSDHEKVEALLDELDELSEIVSSPEVSYSDISPLEMGEDDTNVSATSTDTFQQGIYEPI
EPIEPTEPPEPAEPPKPAETPEDSTVRAPAHPYQRDFPMGARHRFRLSIMGSLTPSDTDDLPLETDEPPQ
QESVQSTPRALEETRIQFLDQVQSLSPEALLDRATEGSDEAEEEGSQLIVLDPDHPLMIRFQEALKGYLN
RQMDKLKLDVQELDVATKQTRSQRQELGVNLYGVQQHLARLQMQLEKSHDRHSLVACERRRKEEELQCAR
SVYNKTCQTANEERKKLAALQTEVESLALHLFYMQNIEQDVRDDIQVMKQVVRKTETEKMHAEVEKKKQD
LFVDQLTERSHQLEENIALFEAQYLSQAEDTRVLKKAVTEAITEIDTIAVEKKRILQQWTTSLVGMKHRN
EAYKTVMDALRECQHQVKSTDSEIEVCKKSIMQEEEKNEKLARLLNRAETEATLVQKMTAQCLSKQEALQ
TEFNTYQLALQDTEEMLNKGYVEHSAVLSELQATRQAFHQEQELRQKMDMSMVDKLQEQGTSSKMTKYFH
QLLRKLQKENTNLVTHLSKIDGDIAQATLDITNTNCKIDMHKKTLAEMDKEVKRFNDLITNSESEIARRT
ILIERKQSLINFFNKQLEQMVSELGGEEAGPLELEIKRLSKLTEEYNTGVAEAQMTWLRLQQELVQVTHE
REEQLVSVDQLKKEVHIMEQKKLRIESKIAHEKKEQKIVSRHMRDLDNDLSKLNMLLDKNRCSSEELEQN
NIATETEFLRTLKDSERETIQMQEKLMELSEEKATLLNSFMEAEHQIMLWEKKIQLAKEMRSSVDSETGQ
TEIRAMKAEIHRMKVRHGQLLKQQEKMIRDMELAVARRETIVVQAEGQSKIDKKVITKTEFHYQQRELQK
KVREMHKATDDCTNTISELEETQKFLSSSLQEKQQLLSEMQATTDVLEEEINQLTALKRQNLLEIVTLQT
RGKHLQAAIEGKYVFLHRNSRSQLMERKRLSVRLSQLNKVLSSVQEDYPQYQEVLQSIQQKIATKLETPE
PS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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