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Report for CCDS19947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19947.1 Public Mus musculus 6 Spam1 23 108 98 CCDS HistoryNCBI Gene:20690Re-query CCDS DB by CCDS ID:19947.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031693.2 ENSMUSP00000031693.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031693.2Link to Ensembl Protein Viewer:ENSMUSP00000031693.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000031693Re-query CCDS DB by Protein ID:ENSMUSP00000031693
Original member Current member EBI ENSMUST00000202331.3 ENSMUSP00000143944.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202331.3Link to Ensembl Protein Viewer:ENSMUSP00000143944.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202331Re-query CCDS DB by Protein ID:ENSMUSP00000143944
Original member Current member EBI ENSMUST00000202569.3 ENSMUSP00000143970.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202569.3Link to Ensembl Protein Viewer:ENSMUSP00000143970.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202569Re-query CCDS DB by Protein ID:ENSMUSP00000143970
Original member Current member NCBI NM_001079875.2 NP_001073344.1 Accepted alive Link to Nucleotide Sequence:NM_001079875.2Link to Protein Sequence:NP_001073344.1Re-query CCDS DB by Nucleotide ID:NM_001079875Re-query CCDS DB by Protein ID:NP_001073344Link to BLAST:NP_001073344.1
Original member Current member NCBI NM_009241.3 NP_033267.2 Accepted alive Link to Nucleotide Sequence:NM_009241.3Link to Protein Sequence:NP_033267.2Re-query CCDS DB by Nucleotide ID:NM_009241Re-query CCDS DB by Protein ID:NP_033267Link to BLAST:NP_033267.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073344.1 512 P48794 512 100% 0 0
NP_033267.2 512 P48794 512 100% 0 0

Chromosomal Locations for CCDS 19947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24796052 24797005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24797801 24797890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24800308 24800802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGGAGAGTTGAGATTTAAGCACCTCTTTTGGGGGAGCTTTGTTGAATCTGGGGGCACATTCCAAACAG
TGTTAATCTTCCTTTTGATTCCATGCTCCTTGACTGTGGATTATAGGGCAGCACCAATTTTATCAAATAC
AACTTTCCTTTGGATTTGGAATGTCCCAACTGAACGTTGTGTAGGAAATGTTAATGATCCAATAGATCTG
AGCTTCTTCTCTTTAATTGGAAGCCCCCGGAAAACTGCCACAGGGCAACCTGTCACATTATTTTATGTTG
ATCGACTTGGTTTGTATCCTCACATAGATGCAAACCAAGCAGAACATTATGGAGGAATACCTCAGAGGGG
CGATTATCAAGCTCATTTGCGCAAAGCTAAGACTGACATAGAGCATTACATTCCAGACGACAAATTGGGC
TTAGCTATCATTGACTGGGAAGAATGGAGGCCTACCTGGTTGAGAAACTGGAAACCTAAGGATAACTACA
GGAATAAGTCTATTGAATTGGTCCAATCAACTAATCCAGGACTTAGTATCACAGAAGCCACCCAGAAAGC
CATACAACAATTTGAAGAGGCAGGAAGGAAGTTTATGGAAGGAACTTTACACCTGGGGAAATTCCTTCGA
CCAAACCAGCTATGGGGTTATTATCTATTTCCTGATTGTTATAACAATAAGTTTCAAGACCCTAAGTATG
ATGGGCAGTGCCCTGCTGTGGAAAAGAAAAGAAATGATAATCTTAAATGGCTATGGAAAGCAAGCACCGG
CCTTTACCCATCTGTCTATTTGAAGAAAGACTTGAAGTCCAATCGACAAGCTACCCTCTATGTCCGCTAC
CGAGTTGTGGAAGCTATCAGAGTGTCCAAGGTTGGGAATGCATCGGATCCAGTCCCGATTTTTGTCTATA
TCCGTCTTGTTTTTACTGATCGTACCTCTGAATACCTTCTAGAGGATGACCTTGTGAATACAATTGGTGA
AATTGTTGCTCTGGGTACCTCTGGAATTATAATATGGGATGCTATGAGTTTAGCACAACGTGCGGCAGGT
TGCCCAATCCTACATAAATACATGCAGACGACCCTGAATCCATACATAGTCAATGTTACCCTAGCAGCCA
AAATGTGCAGCCAAACACTTTGTAATGAGAAAGGCATGTGTTCAAGAAGAAAAGAAAGTTCAGATGTATA
TCTTCACTTGAACCCAAGTCATTTTGATATTATGTTAACGGAAACTGGAAAGTACGAAGTTCTTGGCAAC
CCCAGGGTTGGAGACTTAGAATACTTTTCTGAACATTTTAAATGCAGCTGTTTTAGCAGAATGACATGTA
AGGAGACATCTGATGTAAAAAATGTACAAGACGTGAATGTGTGCGTCGGTGACAATGTTTGTATAAAAGC
CAAGGTAGAACCCAACCCAGCCTTCTACCTCCTACCTGGCAAAAGCCTTCTATTTATGACAACACTTGGT
CATGTGCTGTACCATCTGCCACAAGATATTTTTGTTTTTCCACGGAAGACACTAGTCAGTACTCCTTAG

Translation (512 aa):
MGELRFKHLFWGSFVESGGTFQTVLIFLLIPCSLTVDYRAAPILSNTTFLWIWNVPTERCVGNVNDPIDL
SFFSLIGSPRKTATGQPVTLFYVDRLGLYPHIDANQAEHYGGIPQRGDYQAHLRKAKTDIEHYIPDDKLG
LAIIDWEEWRPTWLRNWKPKDNYRNKSIELVQSTNPGLSITEATQKAIQQFEEAGRKFMEGTLHLGKFLR
PNQLWGYYLFPDCYNNKFQDPKYDGQCPAVEKKRNDNLKWLWKASTGLYPSVYLKKDLKSNRQATLYVRY
RVVEAIRVSKVGNASDPVPIFVYIRLVFTDRTSEYLLEDDLVNTIGEIVALGTSGIIIWDAMSLAQRAAG
CPILHKYMQTTLNPYIVNVTLAAKMCSQTLCNEKGMCSRRKESSDVYLHLNPSHFDIMLTETGKYEVLGN
PRVGDLEYFSEHFKCSCFSRMTCKETSDVKNVQDVNVCVGDNVCIKAKVEPNPAFYLLPGKSLLFMTTLG
HVLYHLPQDIFVFPRKTLVSTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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