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Report for CCDS41178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41178.1 Public Mus musculus X Kdm5c 23 108 98 CCDS HistoryNCBI Gene:20591Re-query CCDS DB by CCDS ID:41178.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112588.8 ENSMUSP00000108207.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112588.8Link to Ensembl Protein Viewer:ENSMUSP00000108207.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112588Re-query CCDS DB by Protein ID:ENSMUSP00000108207
Original member NCBI NM_013668.4 NP_038696.2 Updated not alive Link to Nucleotide Sequence:NM_013668.4Link to Protein Sequence:NP_038696.2Re-query CCDS DB by Nucleotide ID:NM_013668Re-query CCDS DB by Protein ID:NP_038696
Current member NCBI NM_013668.5 NP_038696.2 Accepted alive Link to Nucleotide Sequence:NM_013668.5Link to Protein Sequence:NP_038696.2Re-query CCDS DB by Nucleotide ID:NM_013668Re-query CCDS DB by Protein ID:NP_038696Link to BLAST:NP_038696.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038696.2 1551 P41230-2 1551 100% 0 0

Chromosomal Locations for CCDS 41178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 152233561 152233710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152237633 152237710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152239630 152239752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152240026 152240196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152242037 152242171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152244873 152244996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152245102 152245283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152246255 152246413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152248428 152248547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152248662 152248820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152253424 152253605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152253699 152253861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152261937 152262056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152262163 152262357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152266557 152266738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152266817 152266941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152267083 152267230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152267895 152268000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152268765 152269123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152269715 152269853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152270352 152270531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152270694 152270831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152271012 152271593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152271860 152271929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152272075 152272274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152272709 152273074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4656 nt):
ATGGAGCTGGGGTCCGACGATTTCCTACCGCCGCCGGAGTGTCCGGTGTTCGAGCCTAGCTGGGCCGAGT
TCCGAGACCCTCTTGGCTACATCGCGAAAATCAGACCCATCGCCGAGAAGTCCGGCATTTGCAAGATCCG
CCCACCCGCGGACTGGCAGCCACCCTTTGCCGTGGAAGTGGATAACTTCAGGTTTACTCCCCGAATCCAG
AGGTTGAATGAGCTGGAGGCCCAGACAAGAGTGAAACTGAACTATTTGGACCAGATTGCCAAATTCTGGG
AGATCCAGGGCTCATCCTTAAAGATTCCCAATGTAGAACGGCGGATCTTGGACCTCTATAGCCTCAGCAA
AATTGTGGTGGAAGAAGGTGGTTATGAAACTATCTGCAAGGACCGTCGATGGGCCCGTGTGGCCCAGCGT
CTCAACTACCCACCTGGCAAAAACATTGGTTCCTTGCTACGCTCTCACTATGAACGCATTGTTTATCCCT
ATGAAATGTACCAGTCTGGAGCCAACCTTGTGCAGTGTAACACACGCCCATTTGATAATGAGGAAAAGGA
CAAGGAATATAAACCCCACAGCATCCCCCTTCGACAGTCTGTGCAGCCTTCCAAGTTCAACAGTTATGGA
CGACGGGCAAAGAGACTACAGCCTGATCCGGAACCCACAGAGGAAGACATTGAAAAGAATCCAGAACTGA
AGAAATTACAGATATATGGAGCAGGCCCCAAGATGATGGGGCTGGGCCTAATGGCCAAAGATAAGACTCT
GCGGAAAAAAGATAAAGAAGGGCCTGAGTGTCCCCCCACTGTGGTGGTAAAGGAGGAATTAGGTGGGGAT
GTCAAGATGGAATCAACCTCACCCAAGACCTTCCTAGAAGGCAAGGAGGAACTGAGTCATAGCCCTGAGC
CCTGCACCAAGATGACCATGAGGCTTCGAAGGAACCACAGCAATGCCCAGTTTATTGAGTCATACGTATG
CCGAATGTGTTCCCGAGGAGATGAAGATGACAAACTCTTACTGTGTGATGGCTGTGATGACAATTACCAC
ATCTTTTGCCTGCTGCCTCCTTTGCCTGAAATCCCGAAAGGTGTCTGGAGGTGTCCAAAGTGTGTCATGG
CGGAGTGTAAGCGGCCCCCTGAAGCCTTTGGCTTTGAGCAAGCTACCCGGGAATATACTCTGCAGAGCTT
TGGAGAGATGGCTGACTCCTTTAAAGCTGACTACTTCAACATGCCTGTGCATATGGTACCCACAGAACTT
GTAGAGAAGGAGTTTTGGCGGCTGGTGAATAGCATCGAGGAAGACGTAACTGTGGAGTATGGGGCTGACA
TCCATTCCAAAGAATTTGGCAGCGGTTTCCCTGTCAGTGACAGTAAGCGGCACCTAACCCCAGAGGAGGA
GGAGTATGCTACAAGTGGTTGGAACCTGAATGTGATGCCTGTATTGGAGCAGTCTGTACTGTGCCACATC
AATGCAGATATATCTGGCATGAAGGTACCGTGGCTGTATGTGGGAATGGTCTTCTCAGCCTTTTGCTGGC
ATATTGAAGATCACTGGAGTTACTCTATTAACTACCTCCACTGGGGTGAGCCAAAAACCTGGTATGGAGT
CCCATCGCTTGCAGCGGAACACTTGGAAGAAGTGATGAAGAAGCTGACACCTGAGCTTTTTGATAGCCAG
CCTGATCTCCTTCACCAACTCGTCACCCTCATGAATCCTAACACGCTCATGTCCCATGGTGTGCCGGTTG
TCCGCACAAACCAGTGTGCAGGAGAATTTGTCATCACTTTTCCTCGTGCTTACCACAGTGGTTTCAACCA
AGGCTACAACTTTGCTGAGGCAGTCAACTTTTGCACTGCTGACTGGCTGCCTGCTGGGCGCCAATGCATT
GAGCACTACCGCCGACTACGAAGATACTGTGTCTTTTCTCATGAGGAGCTCATTTGCAAGATGGCTGCCT
GCCCTGAGAAACTGGACCTGAACCTGGCAGCAGCTGTACATAAGGAGATGTTCATTATGGTGCAAGAGGA
GCGGCGTCTACGAAAGGCTCTGTTGGAAAAAGGTATCACCGAGGCTGAGCGAGAGGCTTTTGAGCTGCTT
CCAGATGATGAACGTCAGTGCATAAAGTGCAAGACCACATGTTTCCTATCTGCCCTGGCTTGCTATGACT
GCCCAGATGGCCTTGTCTGCCTTTCTCACATCAATGACCTCTGCAAGTGCTCCAGTAGCCGCCAGTACCT
TCGGTATCGGTACACCTTGGATGAGCTCCCTGCCATGCTGCATAAACTGAAAGTTAGAGCTGAGTCCTTT
GACACCTGGGCTAACAAAGTACGAGTGGCCCTGGAGGTGGAAGATGGGCGGAAGCGCAGCCTGGAAGAAC
TGAGAGCACTAGAATCTGAGGCTCGTGAGCGAAGGTTTCCTAACAGTGAGCTTCTACAGCGACTGAAAAA
CTGCCTGAGTGAAGCAGAGGCTTGTGTGTCCCGGGCTCTGGGATTGGTCAGTGGCCAGGAAGCTGGCCCT
GACAGGGTGGCTGGCCTACAGATGACCCTGGCTGAGCTACGGGATTTTCTGGGCCAGATGAACAACCTGC
CCTGTGCCATGCACCAGATTGGGGATGTCAAGGGTATTCTGGAACAGGTGGAAGCCTACCAGACTGAGGC
CCGTGAGGCCCTGGTCTCACAGCCTTCCAGTCCAGGGCTGCTGCAGTCCTTGTTGGAGAGAGGACAACAG
CTGGGTGTGGAGGTACCTGAAGCCCAGCAGCTCCAAAGGCAGGTGGAACAGGCGCGGTGGCTGGATGAGG
TAAAACGCACGCTGGCTCCCTCTGCCCGAAGGGGTACCCTGGCCATCATGCGGGGACTGTTGGTTGCGGG
CGCCAGTGTAGCCCCTAGCCCTGCTGTGGATAAGGCCCAGGCAGAGCTTCAGGAGCTGCTGACCATCGCT
GAACGCTGGGAAGAGAAAGCCCACCTCTGCTTAGAGGCCAGGCAGAAGCATCCACCAGCCACACTTGAGG
CCATAATCCATGAAGCAGAAAACATCCCTGTTCACTTGCCCAATATCCAGTCTCTCAAGGAGGCTCTTGC
TAAGGCCCGGGCATGGATTGCTGATGTGGATGAGATCCAAAATGGTGACCACTACCCTTGCTTGGATGAC
TTGGAGGGCCTCGTAGCTGTGGGTCGGGACCTCCCTGTGGGGCTGGAGGAACTGAGACAGCTAGAGCTAC
AGGTATTGACAGCACACTCCTGGAGAGAAAAGGCCTCCAAGACCTTCCTCAAGAAGAACTCCTGCTATAC
ATTATTGGAGGTGCTCTGCCCGTGTGCAGACGCCGGCTCAGACAGCACCAAACGCAGCCGGTGGATGGAG
AAGGAGCTGGGGTTGTACAAATCTGACACAGAGCTGTTGGGGCTGTCTGCGCAGGACCTCAGGGACCCAG
GCTCTGTGATCGTGGCCTTCAAAGAGGGGGAGCAGAAGGAGAAGGAAGGGATACTGCAGCTTCGTCGTAC
CAACTCAGCCAAGCCAAGTCCACTGGCACTGTTGACAACAGCCTCCTCTACAGCTTCTATCTGCGTGTGT
GGGCAAGTGCCAGCTGGGGTGGGAGCTCTGCAGTGTGACCTGTGTCAGGACTGGTTCCATGGGCGCTGTG
TGACAGTACCCCGCCTCCTCAGCTCCCAGAGGTCCAGTCTTCCCTCATCCCCACTGCTGGCCTGGTGGGA
ATGGGACACCAAATTCTTGTGCCCTCTGTGTATGCGCTCACGGCGCCCACGCTTGGAAACCATCCTGGCA
CTGCTGGTAGCCCTACAGAGACTGCCTGTGCGGCTGCCTGAGGGTGAGGCTCTACAGTGCCTCACAGAGA
GAGCCATCAGCTGGCAAGGCCGTGCCAGACAGGTTTTGGCCTCTGAGGAAGTGACTGCTCTGTTGGGACG
GCTGGCTGAACTGCGCCAACGGCTACAGGCTGAATCCAAGCCTGAGGAGTCCCTGGCTTACCCTTCAGAT
GGTGGAGAGGGCACTGGCAATATGCCGAAGGTCCAGGGGCTGTTGGAGAATGGGGACAGTGTGACCAGTC
CTGAAAAGGTAGCCACAGAGGAGGGCTCAGATCTGGAGCTGCTATCCTCAATATTACCACAGTTGTCTGG
CCCTGTGTTGGAACTGCCTGAGGCAACCCGAGCCCCACTGGAGGAACTTATGATGGAAGGGGATCTGCTT
GAGGTGACCCTAGATGAGAATCATAGCATCTGGCAGCTGCTGCAGGCTGGGCAGCCTCCAGACTTGAAGA
GGGTCCAGACACTTCTGGAGCTGGAGAAGGCAGAGCGCCATGGGAGTCGGACACGAGGCCGAGCCCTAGA
GAGGAGACGACGGAGGAAGGTGGATCGGGGTGGGGAGCCGGATGACCCGGCACGAGAGGAGCTAGAGCCA
AAGAGGGTACGAAGCTCAGGACCAGAAGCCGAGGAAGTCCAGGAGGAAGAGGAGCTGGAGGAGGAGACTG
GGGGTGAGGTCCCTCCTGTACCCTTCCCCAACAGTGGCAGCCCCAGCATCCAGGAGGACCAGGATGGCTT
AGAACCAGTGTTAGAGGCTGGTTCTGACACCTCAGCCCCTTTCTCTACTCTGACTTCCCGGCTGTTGATG
TCCTGCCCACAGCAGCCATCTCTGCAACAATTGTGA

Translation (1551 aa):
MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQ
RLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQR
LNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYG
RRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGPECPPTVVVKEELGGD
VKMESTSPKTFLEGKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYH
IFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTEL
VEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHI
NADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQ
PDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCI
EHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELL
PDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESF
DTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGP
DRVAGLQMTLAELRDFLGQMNNLPCAMHQIGDVKGILEQVEAYQTEAREALVSQPSSPGLLQSLLERGQQ
LGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAIMRGLLVAGASVAPSPAVDKAQAELQELLTIA
ERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQNGDHYPCLDD
LEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWME
KELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLALLTTASSTASICVC
GQVPAGVGALQCDLCQDWFHGRCVTVPRLLSSQRSSLPSSPLLAWWEWDTKFLCPLCMRSRRPRLETILA
LLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESKPEESLAYPSD
GGEGTGNMPKVQGLLENGDSVTSPEKVATEEGSDLELLSSILPQLSGPVLELPEATRAPLEELMMEGDLL
EVTLDENHSIWQLLQAGQPPDLKRVQTLLELEKAERHGSRTRGRALERRRRRKVDRGGEPDDPAREELEP
KRVRSSGPEAEEVQEEEELEEETGGEVPPVPFPNSGSPSIQEDQDGLEPVLEAGSDTSAPFSTLTSRLLM
SCPQQPSLQQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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