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Report for CCDS17261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17261.1 Public Mus musculus 3 Hltf 23 108 98 CCDS HistoryNCBI Gene:20585Re-query CCDS DB by CCDS ID:17261.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002502.11 ENSMUSP00000002502.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002502.11Link to Ensembl Protein Viewer:ENSMUSP00000002502.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002502Re-query CCDS DB by Protein ID:ENSMUSP00000002502
Original member Current member NCBI NM_001355097.1 NP_001342026.1 Accepted alive Link to Nucleotide Sequence:NM_001355097.1Link to Protein Sequence:NP_001342026.1Re-query CCDS DB by Nucleotide ID:NM_001355097Re-query CCDS DB by Protein ID:NP_001342026Link to BLAST:NP_001342026.1
Original member Current member NCBI NM_009210.3 NP_033236.2 Accepted alive Link to Nucleotide Sequence:NM_009210.3Link to Protein Sequence:NP_033236.2Re-query CCDS DB by Nucleotide ID:NM_009210Re-query CCDS DB by Protein ID:NP_033236Link to BLAST:NP_033236.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342026.1 1003 Q6PCN7 1003 100% 0 0
NP_033236.2 1003 Q6PCN7 1003 100% 0 0

Chromosomal Locations for CCDS 17261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 20057988 20058007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20058899 20059106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20063818 20063984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20064566 20064699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20065322 20065419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20067346 20067420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20068966 20069157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20072369 20072464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20074829 20074895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20076491 20076584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20082752 20082831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20082911 20082955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20083750 20083830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20086096 20086193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20091477 20091620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20092678 20092816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20098080 20098215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20099776 20099955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20105641 20105765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20106350 20106528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20107998 20108123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20108755 20108867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20109305 20109485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20113356 20113436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20116572 20116724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3012 nt):
ATGTCCTATACGTTCACGAGGGGTCCTGTTTGGAAGTATTCGCAGTCTGTCCAGTATGGATCACACGAAA
ATATTCCAAGACTTTCATACTCAACTTTCTTGCCACATTTTGAATTCCAAGACATTATTCCTCCAGATGA
CTTCCTAACGAGTGATGAAGAGCAAGATTTGGTTTTATTTGGAACTATGAGAGGACAAGTTGTTGGACTA
CGCTATTACACAGGAGTTGTAAATAATAATGAAATGGTTGCTTTACAACGAGAGCCTAATAATCCCTATG
ATAAGAATGCTATTAAAGTAAATAATGTGAATGGAAATCAGGTTGGCCATATAAAGAGAGAGATTGCAGC
TGCCGTGGCCTATATCATGGACAACAAATTGGCACAAGTGGAAGGTGTAGTTCCTTTTGGTGCAAGTAAT
ACTTTTACCATGCCTCTTTATATGACTTTCTGGGGAAAAGAAGAAAATAGAAACGTGGTTTTAGAGCAGT
TGAAGAAACATGGATTTAAGTTGGGTCCCACACCAAAGACTTTAGGGTCGAGTTTGGAGAACGCATGGGG
CTCTGGAAGAGCTGGACCAAGCTATAGTAGGCCGGCTCATGTGGCAGTACAGATGACAACTGACCAGCTC
AAAACGGAATTTGACAAATTATTTGAAGATTTAAAAGAAGATGATAGAACTGTTGAAATGGAACCAGCTG
AGGCTATTGAAACACCGTTGCTTCCACACCAAAAACAAGCTCTAGCTTGGATGATCGCACGAGAGAACAG
TAAAGAACTACCACCATTCTGGGAACAGCGCAATGACTTATATTATAATACAATAACAAATTTTTCTGTG
AAGGAACGACCGGAAAATGTTCATGGAGGAATTTTAGCGGATGATATGGGTTTGGGCAAAACTCTTACTG
CTATTGCTGTCATTCTTACCAACTTTGATGATGGCAGGCCTCTTCTCAGTAAGAGAGGCAAGAAGAATCA
TCCAGGAAAGGAATACAAGGATGAGACCATTAAACGCAGAGGAAGTAATATGGACAAGAAGGAAGATGGA
CACTCAGAGTCATCCACGTGTGGTGAAGAACCCAGTATTTCAGGAACTCCGGAGAAGAGTAGCTGTACTC
TGTCGCAGCTGTCTAGCGTCTGCCCTAAGAGAAGAAAAATTTCTGTACAGTACATTGAAAGTAGTGATTC
AGAGGAAATCGAGACAAGCGAACTGCCCCAGAAAATGAAAGGCAAGCTGAAAAATGTACAGTTAAATACT
AAAAGTAGAGTAAAAGGATCATCTAAGGTTAAGGAAGATTCAAAATTTGCACTTACTTTTTTTGCCTCTG
CAACACAAAGGAAAATGTTGAAAAAAGGCATGTCTATGATGGAGTGCTCAGAGGCATGTGACACTGGAGA
GAGGACAAGAGCAACACTGATCATCTGTCCACTCTCTGTGCTCAGCAACTGGATTGACCAGTTTGGACAA
CATGTAAAATCAGAAGTGCACTTGAATTTTTATGTTTATTATGGTCCTGATCGTATTAGAGATTCAGCCT
GGCTTTCAAAACAGGATATTATTTTGACTACTTACAATATTTTAACTCATGATTATGGAACTAAAGATGA
TAGTCCATTGCATAGCATCAAGTGGTTAAGGGTGATCCTGGATGAAGGCCATGCCATTCGAAATCCAAAC
GCTCAGCAGACAAAAGCTGTACTTGAGTTAGAGGCAGAAAGAAGATGGGTATTGACAGGTACTCCTATCC
AGAATTCTTTAAAGGACTTGTGGTCTCTTCTGTCCTTCTTAAAACTTAAGCCATTTATTGATAGAGAGTG
GTGGTATAGGATCATACAGCGTCCTGTCACTACAGGAGATGAGGGAGGACTTAGGCGTTTACAGTCCTTA
ATAAAAAATATCACGCTTAGAAGAACAAAGACAAGCAAAATTAAAGGGAAACCTGTTTTGGAGTTGCCAG
AAAGGAAAGTATTTATTCAGCACATTACTCTGTCAGAAGAAGAGAGAAAGATTTATCAGTCTGTTAAAAA
TGAAGGCAAAGCTGCCATTGGAAGGTATTTTACTGAAGGGACTGTCCTTGCACACTATGCAGATGTCTTG
GGTCTTCTGCTTAGATTGCGGCAGATTTGTTGCCATACCCATCTTCTTACAAACGGAATGTCTTCAAGTG
GCCCCTCCAGAAGTGACACGCCTGAAGAGCTGAGAAAGATGTTAATAGAGAAGATGAAGATAATTCTGAG
CTCTGGTTCAGATGAGGAATGTGCAATCTGCCTGGATTCCTTAACATTTCCTGTGATAACCCACTGTGCA
CACGTGTTCTGTAAACCTTGTATCTGTCAGGTCATTCACAGTGAGCAGCCACATGCAAAGTGTCCTTTGT
GCAGAAATGAGATACATGGAGATAATCTATTAGAATGTCCTCCCGAAGAATTGGCATGTGACAGTGACAA
AGAGTCCAGTATGGAATGGAAGTCCAGCTCAAAGATTAATGCTCTAATGCATGCTTTGATTGAATTACGG
ACAAAGGACCCCAACATAAAAAGTTTAGTTGTTTCTCAGTTTACCACATTCTTGTCTTTAATAGAAACAC
CTCTTAAAGCCTCAGGATTTGTGTTTACTCGTTTAGATGGTTCCATGGCTCAAAAGAAAAGAGTTGAATC
AATTCAGCGTTTTCAAAACACAGAAGCAGGATCTCCTACGATAATGCTACTGTCCTTAAAAGCAGGTGGA
GTTGGCTTGAATCTCTGCGCAGCTTCTCGAGTGTTCTTAATGGATCCCGCCTGGAATCCTGCTGCAGAAG
ATCAGTGCTTTGACCGGTGCCATCGACTTGGCCAGAAGCAAGAGGTGATCATCACAAAATTCATTGTGAA
GGACTCTGTGGAAGAAAATATGTTGAAAATACAGAACACGAAGCGAGACCTTGCAGCTGGAGCCTTTGGC
ACTAAGAAAACAGACGCCAATGACATGAAACAAGCTAAAATCAACGAAATCAGAACTTTAATTGACTTGT
AA

Translation (1003 aa):
MSYTFTRGPVWKYSQSVQYGSHENIPRLSYSTFLPHFEFQDIIPPDDFLTSDEEQDLVLFGTMRGQVVGL
RYYTGVVNNNEMVALQREPNNPYDKNAIKVNNVNGNQVGHIKREIAAAVAYIMDNKLAQVEGVVPFGASN
TFTMPLYMTFWGKEENRNVVLEQLKKHGFKLGPTPKTLGSSLENAWGSGRAGPSYSRPAHVAVQMTTDQL
KTEFDKLFEDLKEDDRTVEMEPAEAIETPLLPHQKQALAWMIARENSKELPPFWEQRNDLYYNTITNFSV
KERPENVHGGILADDMGLGKTLTAIAVILTNFDDGRPLLSKRGKKNHPGKEYKDETIKRRGSNMDKKEDG
HSESSTCGEEPSISGTPEKSSCTLSQLSSVCPKRRKISVQYIESSDSEEIETSELPQKMKGKLKNVQLNT
KSRVKGSSKVKEDSKFALTFFASATQRKMLKKGMSMMECSEACDTGERTRATLIICPLSVLSNWIDQFGQ
HVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILTTYNILTHDYGTKDDSPLHSIKWLRVILDEGHAIRNPN
AQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWYRIIQRPVTTGDEGGLRRLQSL
IKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVL
GLLLRLRQICCHTHLLTNGMSSSGPSRSDTPEELRKMLIEKMKIILSSGSDEECAICLDSLTFPVITHCA
HVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLLECPPEELACDSDKESSMEWKSSSKINALMHALIELR
TKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGG
VGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFG
TKKTDANDMKQAKINEIRTLIDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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