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Report for CCDS50655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50655.1 Public Mus musculus 2 Ccdc34 23 108 98 CCDS HistoryNCBI Gene:68201Re-query CCDS DB by CCDS ID:50655.1Re-query CCDS DB by GeneID:68201See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028580.11 ENSMUSP00000028580.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028580.11Link to Ensembl Protein Viewer:ENSMUSP00000028580.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028580Re-query CCDS DB by Protein ID:ENSMUSP00000028580
Original member Current member NCBI NM_026613.4 NP_080889.3 Accepted alive Link to Nucleotide Sequence:NM_026613.4Link to Protein Sequence:NP_080889.3Re-query CCDS DB by Nucleotide ID:NM_026613Re-query CCDS DB by Protein ID:NP_080889Link to BLAST:NP_080889.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080889.3 367 Q3UI66 367 100% 0 0

Chromosomal Locations for CCDS 50655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 110017868 110018214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110021882 110022014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110032332 110032439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110040574 110040732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110041261 110041402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110044187 110044401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGCGGGCCGCTGGGCCGTGGCGGGCTGCCTCTCCGGCTCCGTGCACCCGTTACCTCGCCCGCTGCAAGC
CGGGCTTCCGGCCCTCCTCGAGTTTTGTCGTCGACCTCTTAGTGGATTCCGGGGATCCAGGGCTGGAGGA
TGTGGCGCTGACCGAGTGCTTGTCGCCGCCGTCTCTGAGCTGCAGCAACTCCACCCTGTCCCTGTTGTCT
CCCCTTGGCCACCAGAGCTTTCCGTTTGGCGCGGACGACAGTGAGGGGGAGGATGAAGAGGCCCTGGACG
AAGATGCCCGTGAGTCCGAGAGCAAGGTGGAGAGCTTGGAAGGAATAGAGTTCCAGCAGCGCTCCAGCTG
TGAAGTTGAGTCGCAAGACAAACAAGAGAAGCTGGTGCTGTTACAGCACGGCAGTCTGACGCCATGGGAG
ATGTGGTTTGTTGGCAAGGAGAAAGAAGAGCGAGGCCGGCTACAACAGAAATTTCTGGAGGAATTAAATC
AGCAAATAGAAAAAAGAAAAGAAATGGAAGAACGTGAAAAAAGGAAGATAATTGCTGAAGTAAAGCACAA
GGAATGGGTTCAAAAGAAAAATAAGCAGGAAAGGAAAGAAAGGGAACAAAAAATTAATAAGGAAATGGAA
GAAAAAGAAGCAAAAAAACGGGAGAAAGAACATTTGCAAGAAAAAGCAAAAGAAAAATATCAAGAATGGT
TGAAGAAAAAAAAAGCTGAAGAGTATGAGAAGAAGAAAAAAGAGAAGGAAAAAGAAAAGCAACGGCAAGC
AGAATTACAGGAGAAAAAGGAAATCGCAGAAAAAAAGTTTAAAGAATGGTTGGAAAATGCAAAAAATAAA
CCTCGTCCGGCTGCAAAGAGCTATGGTTACTCCAGTGGAAAGCTTACAGGTTTTTACAGTGGAAATTCCT
ACCCAGAACCAACTTTTTATAACCCAATTCCTTGGAAGCCAATTCATATGCCCCCTCCTAAGGAAGCTAA
GAGTGGACCCGGAAAGAAGAGTAAACGACATGCAGCGAGCCAGCCCCTCCCATCGTCATCCCTGGCAGTT
CATAATGCCAAGAGCAGTCTTTGCCTTGGAGCTCTGTGCCGAGGACAGAGATAG

Translation (367 aa):
MRAAGPWRAASPAPCTRYLARCKPGFRPSSSFVVDLLVDSGDPGLEDVALTECLSPPSLSCSNSTLSLLS
PLGHQSFPFGADDSEGEDEEALDEDARESESKVESLEGIEFQQRSSCEVESQDKQEKLVLLQHGSLTPWE
MWFVGKEKEERGRLQQKFLEELNQQIEKRKEMEEREKRKIIAEVKHKEWVQKKNKQERKEREQKINKEME
EKEAKKREKEHLQEKAKEKYQEWLKKKKAEEYEKKKKEKEKEKQRQAELQEKKEIAEKKFKEWLENAKNK
PRPAAKSYGYSSGKLTGFYSGNSYPEPTFYNPIPWKPIHMPPPKEAKSGPGKKSKRHAASQPLPSSSLAV
HNAKSSLCLGALCRGQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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