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Report for CCDS19291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19291.1 Public Mus musculus 5 Slc34a2 23 108 98 CCDS HistoryNCBI Gene:20531Re-query CCDS DB by CCDS ID:19291.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094787.7 ENSMUSP00000092380.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094787.7Link to Ensembl Protein Viewer:ENSMUSP00000092380.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094787Re-query CCDS DB by Protein ID:ENSMUSP00000092380
Original member Current member NCBI NM_011402.3 NP_035532.2 Accepted alive Link to Nucleotide Sequence:NM_011402.3Link to Protein Sequence:NP_035532.2Re-query CCDS DB by Nucleotide ID:NM_011402Re-query CCDS DB by Protein ID:NP_035532Link to BLAST:NP_035532.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035532.2 697 Q9DBP0 697 100% 0 0

Chromosomal Locations for CCDS 19291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 53058156 53058267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53058361 53058498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53059139 53059267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53060760 53060903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53061365 53061476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53063849 53064044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53064799 53064894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53065497 53065617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53067567 53067734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53068129 53068245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53068344 53068468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53068995 53069630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGGCTCCTTGGCCCGAGTTGGAAAATGCCCAGCCCAACCCCGGTAAATTCATCGAGGGGGCCTCTGGAC
CACAATCGAGCATACCTGCCAAAGACAAGGAGGCCAGCAAAACAAATGACAACGGGACTCCTGTAGCCAA
GACTGAACTGCTACCCTCCTATTCCGCCCTGGTTCTCATAGAGGAGCATCCCGAGGGGACGGACCCCTGG
GACCTGCCTGAACTCCAGGACACTGGGATCAAATGGTCAGAGAGAGACACCAAAGGGAAGACGCTCTGCA
TTTTCCAGGGGGTTGGGAAGTTCATTCTTCTCCTGGGGTTTCTCTACTTGTTCGTGTGCTCCCTGGATGT
ACTGAGCAGCGCCTTCCAGCTTGTTGGAGGCAAAGTGGCCGGACAGTTCTTCAGCAACAACTCCATCATG
TCTAATCCTGTGGCTGGACTGGTGATAGGGGTTCTGGTGACAGTCATGGTTCAAAGCTCCAGCACCTCTT
CCTCCATCATCGTCAGCATGGTTGCTTCTTCATTGCTGACGGTTCGGGCTGCCATCCCCATCATCATGGG
CGCTAACATTGGAACCTCCATCACCAACACGATCGTGGCGCTTATGCAGGCAGGAGACAGAAATGAGTTC
AGAAGGGCATTTGCAGGAGCCACTGTTCATGACTTCTTCAACTGGCTCTCTGTGTTCGTGCTCTTGCCTC
TGGAGGCTGCCACCCATTACCTGGAGATCCTGACCAACCTTGTGTTAGAAACCTTCAAGTTCCAGAATGG
AGAAGATGCCCCAGACATTCTGAAAGTCATCACAGACCCCTTCACAAAGCTCATCATCCAGCTGGATAAA
AAGGTCATCCAACAAATCGCAATGGGTGACTCAGCGGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTA
AAAGTATAACCAATGTGACTGAGATGAATGTCACCGTCCCCTCGACTGATAACTGCACCTCTCCTTCATA
TTGCTGGACTGATGGCATACAGACCTGGACCATCCAGAACGTTACCCAAAAGGAGAACATTGCTAAATGT
CAGCACATCTTCGTGAACTTCAGTCTCCCAGACCTTGCTGTGGGCATCATCTTGCTTACTGTCTCCCTGG
TGGTCCTCTGTGGCTGTCTGATCATGATAGTCAAGCTGTTGGGTTCTGTGCTCAGGGGACAAGTCGCTAC
TGTCATCAAGAAGACCCTGAATACTGATTTCCCCTTTCCCTTTGCTTGGCTGACTGGCTACCTGGCCATC
CTTGTGGGGGCAGGCATGACCTTCATCGTGCAAAGCAGCTCTGTGTTCACGTCTGCCATGACTCCACTCA
TCGGTATTGGGGTGATCAGCATTGAGAGGGCATATCCACTCACGTTGGGCTCCAACATTGGCACCACCAC
CACCGCCATTCTGGCTGCTTTAGCCAGCCCAGGCAACACCTTGAGGAGTTCTCTCCAGATTGCCCTGTGC
CATTTCTTCTTCAACATCTCTGGAATATTGCTTTGGTACCCAATCCCATTCACCCGTCTGCCCATCCGTC
TGGCTAAAGGCCTAGGCAACATCTCTGCCAAGTATCGCTGGTTCGCAGTCTTCTATCTCATCTTCTTCTT
CTTTGTGACCCCGCTGACAGTGTTTGGCCTGTCTCTGGCAGGCTGGCCAGTGCTGGTGGGCGTGGGCGTA
CCCATCATCCTGCTGCTGCTCCTGGTTCTGTGCCTCCGGATGCTGCAGTTCCGCTGCCCTCGCATCTTGC
CCCTGAAGCTCCGGGACTGGAATTTCCTACCCTTGTGGATGCACTCTCTGAAACCCTGGGACAACGTCAT
CTCCCTGGCCACCACCTGCTTCCAGAGGCGTTGCTGCTGCTGTTGCCGCGTGTGCTGCCGTGTCTGCTGC
ATGGTGTGCGGCTGCAAGTGCTGTCGCTGCAGCAAGTGCTGCAGGGACCAGGGAGAGGAAGAGGAGGAGA
AGGAGCAGGATATCCCGGTCAAGGCTTCTGGGGCCTTTGACAATGCAGCTATGAGCAAAGAGTGCCAAGA
TGAGGGCAAGGGCCAAGTGGAAGTTCTGAGCATGAAGGCCCTGTCCAACACTACAGTGTTCTAG

Translation (697 aa):
MAPWPELENAQPNPGKFIEGASGPQSSIPAKDKEASKTNDNGTPVAKTELLPSYSALVLIEEHPEGTDPW
DLPELQDTGIKWSERDTKGKTLCIFQGVGKFILLLGFLYLFVCSLDVLSSAFQLVGGKVAGQFFSNNSIM
SNPVAGLVIGVLVTVMVQSSSTSSSIIVSMVASSLLTVRAAIPIIMGANIGTSITNTIVALMQAGDRNEF
RRAFAGATVHDFFNWLSVFVLLPLEAATHYLEILTNLVLETFKFQNGEDAPDILKVITDPFTKLIIQLDK
KVIQQIAMGDSAAQNKSLIKIWCKSITNVTEMNVTVPSTDNCTSPSYCWTDGIQTWTIQNVTQKENIAKC
QHIFVNFSLPDLAVGIILLTVSLVVLCGCLIMIVKLLGSVLRGQVATVIKKTLNTDFPFPFAWLTGYLAI
LVGAGMTFIVQSSSVFTSAMTPLIGIGVISIERAYPLTLGSNIGTTTTAILAALASPGNTLRSSLQIALC
HFFFNISGILLWYPIPFTRLPIRLAKGLGNISAKYRWFAVFYLIFFFFVTPLTVFGLSLAGWPVLVGVGV
PIILLLLLVLCLRMLQFRCPRILPLKLRDWNFLPLWMHSLKPWDNVISLATTCFQRRCCCCCRVCCRVCC
MVCGCKCCRCSKCCRDQGEEEEEKEQDIPVKASGAFDNAAMSKECQDEGKGQVEVLSMKALSNTTVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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