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Report for CCDS20889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20889.1 Public Mus musculus 7 Six5 23 108 98 CCDS HistoryNCBI Gene:20475Re-query CCDS DB by CCDS ID:20889.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049454.5 ENSMUSP00000045973.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049454.5Link to Ensembl Protein Viewer:ENSMUSP00000045973.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049454Re-query CCDS DB by Protein ID:ENSMUSP00000045973
Original member Current member NCBI NM_011383.1 NP_035513.1 Accepted alive Link to Nucleotide Sequence:NM_011383.1Link to Protein Sequence:NP_035513.1Re-query CCDS DB by Nucleotide ID:NM_011383Re-query CCDS DB by Protein ID:NP_035513Link to BLAST:NP_035513.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035513.1 719 P70178 719 100% 0 0

Chromosomal Locations for CCDS 20889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19094637 19095418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19096232 19097019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19097156 19097745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGGCTACCTCGCCTGCGGAGCCGAGCGCGGGGCCCGCGGCTCGGGGGGAGGCGGCGGCGGCGACCGAGG
AGCAGGAGGAGGAAGCGCGCCAGCTTCTGCAGACTCTGCAGGCAGCCGAGGGGGAGGCGGCGGCGGCCGG
GGCGGGAGATGCGGCGGCGGCGGCGGACTCTGGGTCCCCGAGTGGCCCGGGGTCTCCCCGGGAGACCGTG
ACCGAGGTGCCCACTGGCCTTCGCTTCTCGCCCGAACAGGTGGCATGCGTGTGCGAGGCGCTGCTGCAGG
CGGGCCACGCCGGCCGCTTGAGCCGCTTCCTGGGCGCGCTGCCCCCGGCCGAGCGCCTACGTGGCAGCGA
TCCGGTGCTGCGCGCGCGGGCCCTAGTGGCCTTCCAGCGGGGTGAATACGCCGAGCTCTACCAACTTCTC
GAGAGCCGCCCTTTCCCCGCCGCCCACCACGCCTTCCTGCAGGACCTCTACCTGCGCGCGCGCTACCACG
AGGCCGAGCGGGCCCGTGGCCGTGCGCTGGGCGCTGTGGACAAATACCGGCTGCGCAAGAAGTTCCCTCT
GCCCAAGACCATCTGGGATGGCGAGGAGACCGTCTATTGCTTCAAGGAGCGCTCGCGAGCGGCGCTCAAG
GCCTGCTACCGCGGCAACCGCTATCCCACGCCTGACGAGAAGCGCCGCCTGGCCACGCTCACCGGCCTCT
CGCTTACACAGGTCAGCAACTGGTTCAAGAACCGGCGACAGCGCGACCGCACTGGGACCGGCGGTGGAGC
GCCTTGCAAAAGCGAGTCTGATGGGAACCCCACTACGGAGGATGAGTCCAGCCGCAGTCCAGAGGACCTG
GAGAGGGGTGTGGCCTCCATGGCTGCTGAGGCCCCCGCCCAGAGTTCCATCTTCCTGGCGGGGGCCACCT
CTCCTGCAACGTGCCCTGCCTCCTCCTCTATCCTAGTGAATGGGAGCTTCCTGGCCGCCAGCAGTCCCCC
AGCAGTGCTCCTCAATGGTAGCCCAGTCATTATCAATAGCTTGGCCCTAGGAGAGAACTCCAGCTTGGGG
CCCTTGCTACTCACAGGAGGAAGTGCCCCTCAACCACAGCCCAGTCTCCAAGGGGTCAGTGAGGCCAAGA
ATTCTCTGGTCCTGGACCCTCAGACAGGAGAGGTTCGACTGGATGAGGCTCAGTCTGAGGCCCCTGAGAC
CAAAGGGGTTCATGGGACTACTGGAGAGGAAATCCCAGGAGCCCTGCCCCAAGTAGTCCCAGGCCCCCCA
CCTGCCTCCACCTTTCCTCTGACCCCGGGAGCTGTGCCTGCTGTGGCTGCTCCTCAGGTTGTACCGCTCT
CCCCTTCTTCTGGGTACCCAACAGGCCTGAGCCCCACCTCCCCACGGCTGAACTTGCCCCAGGTGGTGCC
CACCTCTCAGGTGGTAACCCTGCCTCAGGCTGTGGGGCCACTCCAGCTGTTGGCAGCTGGGCCAGGCAGT
CCTGTGAAGGTGGCAGCTGCAGCGGGGCCTACCAATGTGCACCTGATAAACTCTAGTGTGGGAGTGACTG
CGCTGCAACTTCCCTCGTCCACTGCTCCAGGAAACTTCCTCCTGGCCAACCCTGTGTCTGGTAGCCCCAT
TGTCACTGGGGTAGCTGTGCAGCAGGGCAAGATCATCCTCACTGCCACCTTCCCCACCAGCATGCTCGTC
TCCCAGGTCCTGCCTCCTGCCCCCAGTCTAGCCCTGCCCCTGAAGCAAGAGCCAGCTATCACAGTGCCTG
AAGGAGCTCTCCCAGTGGGCCCCAGCCCCACCCTCCCAGAGGGTCACACTCTGGGGCCAATCTCTACTCA
GCCACTGCCACCTGCTTCTGTTGTCACCTCTGGCACCAGCCTGCCTTTCTCCCCGGACTCCTCTGGCCTG
CTTTCCAGCTTCTCAGCACCCCTACCTGAAGGTCTGATGTTGTCACCTGCAGCTGTGCCAGTCTGGCCAG
CAGGGCTGGAACTGAGCACAGGAGTAGAAGGGCTGGGGACACAGGCCACCCACACTGTGCTGAGGCTGCC
AGACCCTGACCCCCAGGGACTGCTTCTGGGGGCTACAACAGGGACTGAGGTTGATGAGGGGCTAGAAGCT
GAGGCCAAGGTCCTGACCCAGCTGCAGTCGGTACCCGTGGAGGAGCCCTTGGAACTGTGA

Translation (719 aa):
MATSPAEPSAGPAARGEAAAATEEQEEEARQLLQTLQAAEGEAAAAGAGDAAAAADSGSPSGPGSPRETV
TEVPTGLRFSPEQVACVCEALLQAGHAGRLSRFLGALPPAERLRGSDPVLRARALVAFQRGEYAELYQLL
ESRPFPAAHHAFLQDLYLRARYHEAERARGRALGAVDKYRLRKKFPLPKTIWDGEETVYCFKERSRAALK
ACYRGNRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQRDRTGTGGGAPCKSESDGNPTTEDESSRSPEDL
ERGVASMAAEAPAQSSIFLAGATSPATCPASSSILVNGSFLAASSPPAVLLNGSPVIINSLALGENSSLG
PLLLTGGSAPQPQPSLQGVSEAKNSLVLDPQTGEVRLDEAQSEAPETKGVHGTTGEEIPGALPQVVPGPP
PASTFPLTPGAVPAVAAPQVVPLSPSSGYPTGLSPTSPRLNLPQVVPTSQVVTLPQAVGPLQLLAAGPGS
PVKVAAAAGPTNVHLINSSVGVTALQLPSSTAPGNFLLANPVSGSPIVTGVAVQQGKIILTATFPTSMLV
SQVLPPAPSLALPLKQEPAITVPEGALPVGPSPTLPEGHTLGPISTQPLPPASVVTSGTSLPFSPDSSGL
LSSFSAPLPEGLMLSPAAVPVWPAGLELSTGVEGLGTQATHTVLRLPDPDPQGLLLGATTGTEVDEGLEA
EAKVLTQLQSVPVEEPLEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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