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Report for CCDS20689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20689.1 Public Mus musculus 6 St8sia1 23 108 98 CCDS HistoryNCBI Gene:20449Re-query CCDS DB by CCDS ID:20689.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032421.3 ENSMUSP00000032421.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032421.3Link to Ensembl Protein Viewer:ENSMUSP00000032421.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000032421Re-query CCDS DB by Protein ID:ENSMUSP00000032421
Original member Current member NCBI NM_011374.2 NP_035504.2 Accepted alive Link to Nucleotide Sequence:NM_011374.2Link to Protein Sequence:NP_035504.2Re-query CCDS DB by Nucleotide ID:NM_011374Re-query CCDS DB by Protein ID:NP_035504Link to BLAST:NP_035504.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035504.2 355 Q64687 355 100% 0 0

Chromosomal Locations for CCDS 20689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 142828784 142829270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142867854 142867946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142876648 142876757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142914024 142914168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142963536 142963768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGAGCCCCTGCGGGCGGGCCCTACATACGTCCAGAGGGGCCATGGCCATGCTAGCTCGGAAATTCCCGC
GT
ACCCGGCTACCCGTAGGAGCCAGTGCCCTCTGTGTGGTGGTCCTCTGTTGGCTCTACATCTTCCCTGT
C
TACCGGCTGCCCAACGAGAAGGAGATTGTGCAAGGGGTGCTGGCACAGCGGACGGCTTGGAGGACGAAC
CAG
ACGTCAGCCAGTCTCTTCAGGAGACAAATGGAAGACTGCTGTGACCCTGCCCATCTCTTTGCTATGA
CT
AAGATGAACTCCCCCATGGGGAAGAGCCTGTGGTACGATGGGGAGCTCTTATACTCGTTCACCATCGA
T
AATTCCACGTACTCCCTCTTCCCCCAGGCAACCCCCTTCCAGCTGCCATTGAAGAAATGTGCGGTGGTG
GGA
AACGGTGGGATTCTGAAGATGAGTGGCTGTGGCCGTCAAATAGATGAAGCAAATTTTGTCATGCGGT
GC
AACCTGCCTCCCTTGTCAAGTGAGTACACCAGAGATGTCGGTTCCAAAACTCAGTTGGTGACAGCTAA
C
CCCAGCATAATTCGCCAGAGATTTGAAAACCTGCTGTGGTCCAGAAAGAAGTTTGTGGACAACATGAAG
ATC
TATAACCACAGTTACATCTACATGCCTGCCTTTTCTATGAAGACAGGCACAGAGCCGTCTCTCCGTG
TG
TATTACACACTGAAAGATGTTGGAGCCAATCAAACAGTGCTTTTTGCTAACCCCAACTTTCTTCGGAA
C
ATTGGAAAGTTCTGGAAGAGTAGGGGGATCCACGCCAAGCGCTTGTCTACAGGACTCTTTTTGGTGAGT
GCA
GCCTTGGGCCTCTGTGAGGAGGTGTCCATCTATGGCTTCTGGCCCTTCTCGGTGAACATGCAAGGGG
AC
CCTATCAGTCACCACTACTATGACAACGTCTTGCCCTTCTCAGGCTACCATGCCATGCCTGAGGAATT
C
CTTCAGCTTTGGTATCTTCACAAAATCGGCGCGCTGAGGATGCAGCTGGACCCGTGTGAGGAGCCGTCA
CCA
CAGCCCACTTCCTAG


Translation (355 aa):
MSPCGRALHTSRGAMAMLARKFPRTRLPVGASALCVVVLCWLYIFPVYRLPNEKEIVQGVLAQRTAWRTN
Q
TSASLF
RRQMEDCCDPAHLFAMTKMNSPMGKSLWYDGELLYSFTIDNSTYSLFPQATPFQLPLKKCAVV
G
NGGILKMSGCGRQIDEANFVM
RCNLPPLSSEYTRDVGSKTQLVTANPSIIRQRFENLLWSRKKFVDNMK
I
YNHSYIYMPAFSMKTGTEPSLRVYYTLKDVGANQTVLFANPNFLRNIGKFWKSRGIHAKRLSTGLFLVS
A
ALGLCEEVSIYGFWPFSVNMQGDPISHHYYDNVLPFSGYHAMPEEFLQLWYLHKIGALRMQLDPCEEPS
P
QPTS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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