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Report for CCDS28896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28896.1 Public Mus musculus 17 Sema6b 23 108 98 CCDS HistoryNCBI Gene:20359Re-query CCDS DB by CCDS ID:28896.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001256.10 ENSMUSP00000001256.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001256.10Link to Ensembl Protein Viewer:ENSMUSP00000001256.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001256Re-query CCDS DB by Protein ID:ENSMUSP00000001256
Original member Current member EBI ENSMUST00000167545.2 ENSMUSP00000130985.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167545.2Link to Ensembl Protein Viewer:ENSMUSP00000130985.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167545Re-query CCDS DB by Protein ID:ENSMUSP00000130985
Original member Current member NCBI NM_001130456.1 NP_001123928.1 Accepted alive Link to Nucleotide Sequence:NM_001130456.1Link to Protein Sequence:NP_001123928.1Re-query CCDS DB by Nucleotide ID:NM_001130456Re-query CCDS DB by Protein ID:NP_001123928Link to BLAST:NP_001123928.1
Original member Current member NCBI NM_013662.2 NP_038690.1 Accepted alive Link to Nucleotide Sequence:NM_013662.2Link to Protein Sequence:NP_038690.1Re-query CCDS DB by Nucleotide ID:NM_013662Re-query CCDS DB by Protein ID:NP_038690Link to BLAST:NP_038690.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123928.1 886 O54951 886 100% 0 0
NP_038690.1 886 O54951 886 100% 0 0

Chromosomal Locations for CCDS 28896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56124001 56124917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56125333 56125391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56125517 56125594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56126217 56126366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56126450 56126632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56126940 56127089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56127478 56127609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56128250 56128467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56129408 56129496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56129973 56130092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56130706 56130796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56131113 56131214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56131523 56131585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56131743 56131803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56132498 56132621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56132716 56132839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2661 nt):
ATGTGGACCCCGCGAGTGCCCCCTCCACGCCCGGCCCTGTCGTTTTTCCTGCTGTTGCTCCTGGGGGTCA
CCTATGGCCTTTTCCCAGAAGAACCACCTCCACTCAGCGTGGCTCCCAGGGACTACTTGAGCCACTATCC
CGTGTTCGTGGGCAGCGGGCCTGGTCGTCTGACCGCTGCGGAGGGTGCTGAGGACCTCAACATCCAGAGA
GTGCTACGTGTTAACAGGACACTGTTCATTGGGGACAGAGATAACCTGTACCAAGTAGAACTGGAGCCAT
CCACTTCCACGGAGCTGCGATATCAGAGGAAGCTGACCTGGCGCTCCAACCCCAGTGACATCGATGTGTG
TCGAATGAAGGGCAAGCAAGAGGGTGAGTGTCGGAACTTTGTCAAGGTGCTCCTGCTTCGCGATGAGTCC
ACGCTGTTCGTGTGCGGCTCCAATGCGTTCAATCCCATCTGCGCCAATTACAGTATGGACACACTGCAGC
TTCTTGGTGACAGCATCAGCGGTATGGCCCGCTGCCCCTATGACCCCAAACATGCCAATGTCGCCCTCTT
CTCAGATGGGATGCTCTTCACAGCCACGGTGACTGACTTCCTAGCCATCGACGCTGTTATCTACCGCAGC
CTTGGGGACCGGCCCACACTGCGCACAGTAAAGCACGACTCCAAGTGGTTTAAAGAGCCGTACTTTGTGC
ATGCAGTGGAGTGGGGAAGCCACGTCTATTTCTTCTTCCGGGAGATCGCCATGGAGTTTAACTACCTGGA
AAAGGTGGTGGTGTCTCGAGTGGCCCGTGTGTGCAAGAATGACGTGGGCGGCTCGCCACGAGTGCTGGAG
AAGCAGTGGACTTCCTTCCTGAAGGCCCGGCTCAACTGCTCAGTGCCAGGGGATTCACACTTCTACTTCA
ACGTCCTGCAGGCTGTGACGGGCGTGGTGAGCCTGGGTGGTCGTCCGGTGATCCTCGCTGTCTTCTCAAC
TCCTAGCAACAGCATCCCCGGCTCAGCCGTCTGCGCCTTTGACATGAACCAAGTGGCTGCTGTGTTTGAA
GGCCGCTTCCGGGAACAGAAGTCGCCTGAGTCGATCTGGACACCAGTGCCTGAAGACCAAGTGCCACGGC
CCAGGCCTGGGTGCTGCGCGGCACCTGGCATGCAGTACAACGCGTCCAGTGCCCTCCCTGACGAGATCCT
CAACTTTGTAAAGACCCACCCACTGATGGATGAGGCAGTACCTTCCCTGGGTCACTCGCCGTGGATTGTG
AGAACTCTGATGCGGCACCAGCTGACCCGAGTGGCTGTGGATGTGGGTGCGGGTCCATGGGGCAATCAGA
CAATAGTCTTCCTTGGCTCCGAGGCTGGCACAGTCCTCAAATTTCTTGTGAAGCCCAACGCCAGTGTCTC
AGGGACCACAGGGCCCAGCATCTTTTTGGAGGAGTTTGAGACCTACCGGCCAGACAGGTGTGGACGACCC
AGCAGTGCTGGTGAGTGGGGGCAGCGACTTCTCAGCCTGGAGCTGGATGCAGCCTCAGGGGGCCTGCTGG
CAGCCTTCCCCCGCTGTGTGGTTCGTGTTCCTGTTGCCCGTTGCCAGCTGTACTCGGGGTGCATGAAGAA
CTGTATTGGCAGCCAGGATCCATACTGCGGGTGGGCCCCTGATGGCTCCTGCATCTTCCTCAGACCAGGA
ACTAGTGCCACGTTTGAGCAAGATGTGTCCGGGGCCAGCACCTCTGGCTTAGGTGACTGCACTGGACTCT
TGCGCGCCAGCCTCTCAGATGACCGCGCAGGGCTGGTGTCGGTGAACCTGCTAGTGACGTCCTCGGTGGC
AGCGTTCGTGGTGGGTGCCGTGGTGTCCGGCTTCAGTGTAGGCTGGTTCGTGGGTCTCCGCGAGCGGCGG
GAGCTGGCCCGGCGCAAGGACAAGGAGGCCATTCTGGCGCACGGCGGCAGCGAGGCAGTTCTGAGCGTGA
GCCGACTAGGCGAGCGCAGGGGGACCGGGCCCGGGGGTCGTGGAGGAGCCGGCGGCGGTCCCGGAGGTCC
CCCGGAGGCCCTGCTGGCCCCGCTTATGCAGAATGGCTGGACAAAGGCAGCGCTGCTGCATGGTGGCCCT
CACGACCTGGACACGGGGCTGCTGCCCACCCCAGAGCAGACGCCTCTACCCCAGAAACGCCTGCCCACGC
CACACCCACACGCCCACGCCCTGGGGTCTCGAGCCTGGGACCACAGCCACGCGCTGCTGTCGGCCTCAGC
CTCCACCTCCTTGCTCCTACTGGCGCCCGCCCGCGCCTCTGAGCAGCCCCAGGTGCCAGCCGAGCCGGGC
CCGGAATCTCGCCTCTGCGCCCCCAGATCCTGCCGGGCCTCTCACCCAGGCGACTTCCCGCTCACGCCCC
ACGCCAGCCCGGACCGCCGGCGGGTGGTGTCCGCACCCACGGGCCCCTTGGACCCTTCGGTGGGCGACGG
CCTGCCCGGGCCATGGAGCCCACCTGCAACCAGCAGCCTGCGGAGGCCGGGTCCCCACGGGCCCCCCACA
GCCGCCCTACGGCGCACACACACATTCAACAGCGGCGAGGCTCGGCCCGGGGGTCATCGTCCTCGCCGCC
ACCCACCCGCGGACTCTACACACTTGCTGCCCTGCGGGACGGGCGAGCGGACTGCACCCCCGGTACCCTA
G

Translation (886 aa):
MWTPRVPPPRPALSFFLLLLLGVTYGLFPEEPPPLSVAPRDYLSHYPVFVGSGPGRLTAAEGAEDLNIQR
VLRVNRTLFIGDRDNLYQVELEPSTSTELRYQRKLTWRSNPSDIDVCRMKGKQEGECRNFVKVLLLRDES
TLFVCGSNAFNPICANYSMDTLQLLGDSISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRS
LGDRPTLRTVKHDSKWFKEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLE
KQWTSFLKARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVILAVFSTPSNSIPGSAVCAFDMNQVAAVFE
GRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDEILNFVKTHPLMDEAVPSLGHSPWIV
RTLMRHQLTRVAVDVGAGPWGNQTIVFLGSEAGTVLKFLVKPNASVSGTTGPSIFLEEFETYRPDRCGRP
SSAGEWGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQLYSGCMKNCIGSQDPYCGWAPDGSCIFLRPG
TSATFEQDVSGASTSGLGDCTGLLRASLSDDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERR
ELARRKDKEAILAHGGSEAVLSVSRLGERRGTGPGGRGGAGGGPGGPPEALLAPLMQNGWTKAALLHGGP
HDLDTGLLPTPEQTPLPQKRLPTPHPHAHALGSRAWDHSHALLSASASTSLLLLAPARASEQPQVPAEPG
PESRLCAPRSCRASHPGDFPLTPHASPDRRRVVSAPTGPLDPSVGDGLPGPWSPPATSSLRRPGPHGPPT
AALRRTHTFNSGEARPGGHRPRRHPPADSTHLLPCGTGERTAPPVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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