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Report for CCDS9888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9888.1 Public Homo sapiens 14 TDP1 24 110 108 CCDS HistoryNCBI Gene:55775Re-query CCDS DB by CCDS ID:9888.1Re-query CCDS DB by GeneID:55775See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9888.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335725.9 ENSP00000337353.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335725.9Link to Ensembl Protein Viewer:ENSP00000337353.4Re-query CCDS DB by Nucleotide ID:ENST00000335725Re-query CCDS DB by Protein ID:ENSP00000337353
Original member Current member EBI ENST00000393454.6 ENSP00000377099.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393454.6Link to Ensembl Protein Viewer:ENSP00000377099.2Re-query CCDS DB by Nucleotide ID:ENST00000393454Re-query CCDS DB by Protein ID:ENSP00000377099
Original member Current member NCBI NM_001008744.2 NP_001008744.1 Accepted alive Link to Nucleotide Sequence:NM_001008744.2Link to Protein Sequence:NP_001008744.1Re-query CCDS DB by Nucleotide ID:NM_001008744Re-query CCDS DB by Protein ID:NP_001008744Link to BLAST:NP_001008744.1
Original member Current member NCBI NM_018319.4 NP_060789.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018319.4Link to Protein Sequence:NP_060789.2Re-query CCDS DB by Nucleotide ID:NM_018319Re-query CCDS DB by Protein ID:NP_060789Link to BLAST:NP_060789.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008744.1 608 Q9NUW8-1 608 100% 0 0
NP_060789.2 608 Q9NUW8-1 608 100% 0 0

Chromosomal Locations for CCDS 9888.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 89963115 89963673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89966147 89966190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89967367 89967422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89971175 89971271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89975781 89975815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89980540 89980632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89984516 89984683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89985132 89985210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89988905 89989090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89989717 89989765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89991917 89991983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89993376 89993483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 90019316 90019418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 90033106 90033214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 90043070 90043143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGTCTCAGGAAGGCGATTATGGGAGGTGGACCATATCTAGTAGTGATGAAAGTGAGGAAGAAAAGCCAA
AACCAGACAAGCCATCTACCTCTTCTCTTCTCTGTGCCAGGCAAGGAGCAGCAAATGAGCCCAGGTACAC
CTGTTCCGAGGCCCAGAAAGCTGCACACAAGAGGAAAATATCACCTGTGAAATTCAGCAATACAGATTCA
GTTTTACCTCCCAAAAGGCAGAAAAGCGGTTCCCAGGAGGACCTCGGCTGGTGTCTGTCCAGCAGTGATG
ATGAGCTGCAACCAGAAATGCCGCAGAAGCAGGCTGAGAAAGTGGTGATCAAAAAGGAGAAAGACATCTC
TGCTCCCAATGACGGCACTGCCCAAAGAACTGAAAATCATGGCGCTCCCGCCTGCCACAGGCTCAAAGAG
GAGGAAGACGAGTATGAGACATCAGGGGAGGGCCAGGACATTTGGGACATGCTGGATAAAGGGAACCCCT
TCCAGTTTTACCTCACTAGAGTCTCTGGAGTTAAGCCAAAGTATAACTCTGGAGCCCTCCACATCAAGGA
TATTTTATCTCCTTTATTTGGGACGCTTGTTTCTTCAGCTCAGTTTAACTACTGCTTTGACGTGGACTGG
CTCGTAAAACAGTATCCACCAGAGTTCAGGAAGAAGCCAATCCTGCTTGTGCATGGTGATAAGCGAGAGG
CTAAGGCTCACCTCCATGCCCAGGCCAAGCCTTACGAGAACATCTCTCTCTGCCAGGCAAAGTTGGATAT
TGCGTTTGGAACACACCACACGAAAATGATGCTGCTGCTCTATGAAGAAGGCCTCCGGGTTGTCATACAC
ACCTCCAACCTCATCCATGCTGACTGGCACCAGAAAACTCAAGGAATATGGTTGAGCCCCTTATACCCAC
GAATTGCTGATGGAACCCACAAATCTGGAGAGTCGCCAACACATTTTAAAGCTGATCTCATCAGTTACTT
GATGGCTTATAATGCCCCTTCTCTCAAGGAGTGGATAGATGTCATTCACAAGCACGATCTCTCTGAAACA
AATGTTTATCTTATTGGTTCAACCCCAGGACGCTTTCAAGGAAGTCAAAAAGATAATTGGGGACATTTTA
GACTTAAGAAGCTTCTGAAAGACCATGCCTCATCCATGCCTAACGCAGAGTCCTGGCCTGTCGTAGGTCA
GTTTTCAAGCGTTGGCTCCTTGGGAGCCGATGAATCAAAGTGGTTATGTTCTGAGTTTAAAGAGAGCATG
CTGACACTGGGGAAGGAAAGCAAGACTCCAGGAAAAAGCTCTGTTCCTCTTTACTTGATCTATCCTTCTG
TGGAAAATGTGCGGACCAGTTTAGAAGGATATCCTGCTGGGGGCTCTCTTCCCTATAGCATCCAGACAGC
TGAAAAACAGAATTGGCTGCATTCCTATTTTCACAAATGGTCAGCTGAGACTTCTGGCCGCAGCAATGCC
ATGCCACATATTAAGACATATATGAGGCCTTCTCCAGACTTCAGTAAAATTGCTTGGTTCCTTGTCACAA
GCGCAAATCTGTCCAAGGCTGCCTGGGGAGCATTGGAGAAGAATGGCACCCAGCTGATGATCCGCTCCTA
CGAGCTCGGGGTCCTTTTCCTCCCTTCAGCATTTGGTCTAGACAGTTTCAAAGTGAAACAGAAGTTCTTC
GCTGGCAGCCAGGAGCCAATGGCCACCTTTCCTGTGCCATATGATTTGCCTCCAGAACTGTATGGAAGTA
AAGATCGGCCATGGATATGGAACATTCCTTATGTCAAAGCACCGGATACGCATGGGAACATGTGGGTGCC
CTCCTGA

Translation (608 aa):
MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKISPVKFSNTDS
VLPPKRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPNDGTAQRTENHGAPACHRLKE
EEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDW
LVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIH
TSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSET
NVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESM
LTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNA
MPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSAFGLDSFKVKQKFF
AGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNMWVPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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