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Report for CCDS28844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28844.1 Public Mus musculus 17 Prph2 23 108 98 CCDS HistoryNCBI Gene:19133Re-query CCDS DB by CCDS ID:28844.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024773.5 ENSMUSP00000024773.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024773.5Link to Ensembl Protein Viewer:ENSMUSP00000024773.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000024773Re-query CCDS DB by Protein ID:ENSMUSP00000024773
Original member Current member NCBI NM_008938.2 NP_032964.1 Accepted alive Link to Nucleotide Sequence:NM_008938.2Link to Protein Sequence:NP_032964.1Re-query CCDS DB by Nucleotide ID:NM_008938Re-query CCDS DB by Protein ID:NP_032964Link to BLAST:NP_032964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032964.1 346 P15499 346 100% 0 0

Chromosomal Locations for CCDS 28844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46910697 46911277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46919764 46920010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46923335 46923547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGCGCTGCTCAAAGTCAAGTTTGACCAGAAGAAGCGGGTCAAGTTGGCCCAGGGGCTCTGGCTTATGA
ACTGGCTGTCCGTGTTGGCCGGCATCGTCCTCTTCAGCTTGGGGCTGTTCTTGAAGATTGAACTTCGCAA
GAGGAGCGAAGTGATGAATAATTCTGAGAGCCACTTTGTGCCCAACTCCCTGATAGGGGTGGGGGTCCTG
TCCTGTGTCTTCAACTCTCTGGCTGGGAAGATCTGCTATGATGCCCTGGACCCGGCCAAGTACGCCAAGT
GGAAGCCCTGGCTGAAGCCGTACCTGGCTGTCTGCATCTTCTTTAACGTCATCCTCTTCCTGGTGGCTCT
CTGCTGCTTTCTGTTGCGGGGCTCCCTGGAGAGCACCCTGGCTTACGGACTCAAGAATGGGATGAAGTAT
TATCGGGATACGGACACCCCCGGCCGGTGCTTCATGAAAAAGACCATCGACATGCTCCAGATTGAGTTCA
AGTGCTGTGGGAACAACGGCTTCCGGGACTGGTTCGAGATTCAGTGGATCAGCAATCGCTACCTGGACTT
CTCCTCCAAGGAGGTCAAAGATCGCATCAAGAGCAACGTGGATGGGCGGTACCTGGTGGACGGCGTCCCT
TTCAGCTGCTGCAACCCCAGCTCCCCGCGGCCCTGTATCCAGTACCAGCTCACCAACAACTCGGCGCACT
ACAGCTATGACCATCAGACTGAGGAGCTCAACCTCTGGCTGCGGGGCTGCAGGGCCGCTCTGCTGAATTA
CTACAGCAGCCTCATGAATTCCATGGGCGTCGTCACACTTCTCGTCTGGCTCTTTGAGGTGAGCATCACT
GCCGGACTCCGCTACCTCCACACAGCGCTGGAGAGTGTGTCTAACCCGGAGGACCCCGAGTGTGAGAGTG
AGGGCTGGCTGCTGGAGAAGAGCGTGCCCGAGACCTGGAAGGCCTTTCTGGAGAGCTTTAAGAAGCTGGG
CAAGAGCAATCAGGTGGAGGCTGAAGGTGCAGACGCAGGCCCGGCTCCAGAGGCTGGCTGA

Translation (346 aa):
MALLKVKFDQKKRVKLAQGLWLMNWLSVLAGIVLFSLGLFLKIELRKRSEVMNNSESHFVPNSLIGVGVL
SCVFNSLAGKICYDALDPAKYAKWKPWLKPYLAVCIFFNVILFLVALCCFLLRGSLESTLAYGLKNGMKY
YRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVP
FSCCNPSSPRPCIQYQLTNNSAHYSYDHQTEELNLWLRGCRAALLNYYSSLMNSMGVVTLLVWLFEVSIT
AGLRYLHTALESVSNPEDPECESEGWLLEKSVPETWKAFLESFKKLGKSNQVEAEGADAGPAPEAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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