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Report for CCDS23536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23536.1 Public Mus musculus 9 Prkar2a 23 108 98 CCDS HistoryNCBI Gene:19087Re-query CCDS DB by CCDS ID:23536.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23536.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035220.11 ENSMUSP00000035220.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035220.11Link to Ensembl Protein Viewer:ENSMUSP00000035220.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035220Re-query CCDS DB by Protein ID:ENSMUSP00000035220
Original member Current member NCBI NM_008924.3 NP_032950.1 Accepted alive Link to Nucleotide Sequence:NM_008924.3Link to Protein Sequence:NP_032950.1Re-query CCDS DB by Nucleotide ID:NM_008924Re-query CCDS DB by Protein ID:NP_032950Link to BLAST:NP_032950.1

Chromosomal Locations for CCDS 23536.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108692457 108692712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108714273 108714308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108716863 108716915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108719203 108719286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108728174 108728280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108733110 108733263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108740435 108740536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108740688 108740762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108744230 108744295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108745482 108745623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108746861 108746994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGAGCCACATCCAGATCCCCGCGGGGCTCACGGAGCTGCTGCAGGGCTACACCGTGGAGGTGCTTCGGC
AGCAGCCGCCCGACCTCGTCGACTTCGCGGTGGAGTACTTCACACGCCTGCGCGAGGCCCGCCGCCAGGA
ATCAGACACGTTCATCGTCTCCCCGACGACCTTTCACACGCAGGAGTCCAGCGCAGTCCCCGTCATCGAG
GAGGACGGGGAGAGTGACTCGGACTCGGAAGATGCCGATCTGGAAGTTCCGGTTCCTAGCAAATTTACTA
GACGAGTATCAGTCTGTGCAGAAACGTTTAACCCTGATGAAGAAGAGGAGGATAACGATCCAAGGGTGGT
TCATCCCAAAACTGATGAGCAGAGATGCCGGCTTCAGGAAGCTTGTAAAGATATTCTTCTTTTCAAAAAC
CTTGATCAGGAACAGCTTTCTCAAGTTCTGGATGCCATGTTTGAAAAGATTGTCAAAACTGACGAGCATG
TCATTGACCAAGGCGACGACGGGGACAACTTTTATGTCATAGAACGGGGAACCTATGACATTTTAGTAAC
GAAAGATAATCAAACACGTTCTGTTGGTCAGTATGACAACCGTGGCAGTTTTGGAGAACTAGCTCTGATG
TACAATACCCCGAGAGCTGCTACCATCATCGCCACCTCAGAAGGCTCCCTTTGGGGATTGGACCGGGTGA
CTTTTAGAAGAATCATAGTGAAAAACAATGCAAAGAAGAGGAAGATGTTTGAATCATTTATTGAGTCTGT
TCCACTCTTTAAGTCACTAGAGATGTCAGAACGAATGAAGATTGTGGATGTGATCGGGGAAAAGATCTAT
AAGGACGGAGAGCGAATAATCGCACAGGGTGAAAAGGCCGACAGCTTCTATATCATAGAGTCTGGGGAAG
TGAGCATCTTGATTAGAAGCAAGACCAAGTCAAACAAGAATGGAGGGAACCAGGAGGTCGAGATTGCCCA
TTGCCATAAGGGGCAGTACTTCGGAGAACTTGCCCTGGTCACCAACAAACCCAGAGCTGCTTCCGCTTAC
GCGGTTGGAGATGTCAAATGCTTAGTTATGGATGTTCAAGCATTTGAGAGGCTTCTGGGCCCCTGCATGG
ACATCATGAAGAGGAACATCTCACATTACGAAGAACAGCTGGTGAAGATGTTTGGCTCCAACTTGGATCT
GATGGACCCCGGGCAGTAG

Translation (402 aa):
MSHIQIPAGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREARRQESDTFIVSPTTFHTQESSAVPVIE
EDGESDSDSEDADLEVPVPSKFTRRVSVCAETFNPDEEEEDNDPRVVHPKTDEQRCRLQEACKDILLFKN
LDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALM
YNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLFKSLEMSERMKIVDVIGEKIY
KDGERIIAQGEKADSFYIIESGEVSILIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAY
AVGDVKCLVMDVQAFERLLGPCMDIMKRNISHYEEQLVKMFGSNLDLMDPGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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