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Report for CCDS27721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27721.1 Public Mus musculus 15 Ppara 23 108 98 CCDS HistoryNCBI Gene:19013Re-query CCDS DB by CCDS ID:27721.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057979.5 ENSMUSP00000059719.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057979.5Link to Ensembl Protein Viewer:ENSMUSP00000059719.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057979Re-query CCDS DB by Protein ID:ENSMUSP00000059719
Original member Current member EBI ENSMUST00000109422.7 ENSMUSP00000105049.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109422.7Link to Ensembl Protein Viewer:ENSMUSP00000105049.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109422Re-query CCDS DB by Protein ID:ENSMUSP00000105049
Original member Current member EBI ENSMUST00000109423.7 ENSMUSP00000105050.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109423.7Link to Ensembl Protein Viewer:ENSMUSP00000105050.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109423Re-query CCDS DB by Protein ID:ENSMUSP00000105050
Original member Current member NCBI NM_001113418.1 NP_001106889.1 Accepted alive Link to Nucleotide Sequence:NM_001113418.1Link to Protein Sequence:NP_001106889.1Re-query CCDS DB by Nucleotide ID:NM_001113418Re-query CCDS DB by Protein ID:NP_001106889Link to BLAST:NP_001106889.1
Original member Current member NCBI NM_011144.6 NP_035274.2 Accepted alive Link to Nucleotide Sequence:NM_011144.6Link to Protein Sequence:NP_035274.2Re-query CCDS DB by Nucleotide ID:NM_011144Re-query CCDS DB by Protein ID:NP_035274Link to BLAST:NP_035274.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106889.1 468 P23204 468 100% 0 0
NP_035274.2 468 P23204 468 100% 0 0

Chromosomal Locations for CCDS 27721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 85777560 85777767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85787108 85787268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85788979 85789117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85790840 85791042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85797816 85798263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85801011 85801258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGTGGACACAGAGAGCCCCATCTGTCCTCTCTCCCCACTGGAGGCAGATGACCTGGAAAGTCCCTTAT
CTGAAGAATTCTTACAAGAAATGGGAAACATTCAAGAGATTTCTCAGTCCATCGGTGAGGAGAGCTCTGG
AAGCTTTGGTTTTGCAGACTACCAGTACTTAGGAAGCTGTCCGGGCTCCGAGGGCTCTGTCATCACAGAC
ACCCTCTCTCCAGCTTCCAGCCCTTCCTCAGTCAGCTGCCCCGTGATCCCCGCCAGCACGGACGAGTCCC
CCGGCAGTGCCCTGAACATCGAGTGTCGAATATGTGGGGACAAGGCCTCAGGGTACCACTACGGAGTTCA
CGCATGTGAAGGCTGTAAGGGCTTCTTTCGGCGAACTATTCGGCTGAAGCTGGTGTACGACAAGTGTGAT
CGGAGCTGCAAGATTCAGAAGAAGAACCGGAACAAATGCCAGTACTGCCGTTTTCACAAGTGCCTGTCTG
TCGGGATGTCACACAATGCAATTCGCTTTGGAAGAATGCCAAGATCTGAAAAAGCAAAACTGAAAGCAGA
AATTCTTACCTGTGAACACGACCTGAAAGATTCGGAAACTGCAGACCTCAAATCTCTGGGCAAGAGAATC
CACGAAGCCTACCTGAAGAACTTCAACATGAACAAGGTCAAGGCCCGGGTCATACTCGCGGGAAAGACCA
GCAACAACCCGCCTTTTGTCATACATGACATGGAGACCTTGTGTATGGCCGAGAAGACGCTTGTGGCCAA
GATGGTGGCCAACGGCGTCGAAGACAAAGAGGCAGAGGTCCGATTCTTCCACTGCTGCCAGTGCATGTCC
GTGGAGACCGTCACGGAGCTCACAGAATTTGCCAAGGCTATCCCAGGCTTTGCAAACTTGGACTTGAACG
ACCAAGTCACCTTGCTAAAGTACGGTGTGTATGAAGCCATCTTCACGATGCTGTCCTCCTTGATGAACAA
AGACGGGATGCTGATCGCGTACGGCAATGGCTTTATCACACGCGAGTTCCTTAAGAACCTGAGGAAGCCG
TTCTGTGACATCATGGAACCCAAGTTTGACTTCGCTATGAAGTTCAATGCCTTAGAACTGGATGACAGTG
ACATTTCCCTGTTTGTGGCTGCTATAATTTGCTGTGGAGATCGGCCTGGCCTTCTAAACATAGGCTACAT
TGAGAAGTTGCAGGAGGGGATTGTGCACGTGCTTAAGCTCCACCTGCAGAGCAACCATCCAGATGACACC
TTCCTCTTCCCAAAGCTCCTTCAAAAAATGGTGGACCTTCGGCAGCTGGTCACGGAGCATGCGCAGCTCG
TACAGGTCATCAAGAAGACCGAGTCCGACGCAGCGCTGCACCCACTGTTGCAAGAGATCTACAGAGACAT
GTACTGA

Translation (468 aa):
MVDTESPICPLSPLEADDLESPLSEEFLQEMGNIQEISQSIGEESSGSFGFADYQYLGSCPGSEGSVITD
TLSPASSPSSVSCPVIPASTDESPGSALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCD
RSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDLKDSETADLKSLGKRI
HEAYLKNFNMNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVEDKEAEVRFFHCCQCMS
VETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITREFLKNLRKP
FCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIEKLQEGIVHVLKLHLQSNHPDDT
FLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAALHPLLQEIYRDMY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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