NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39130.1 Public Mus musculus 5 Sult1d1 23 108 98 CCDS HistoryNCBI Gene:53315Re-query CCDS DB by CCDS ID:39130.1Re-query CCDS DB by GeneID:53315See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39130.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113314.2 ENSMUSP00000108940.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113314.2Link to Ensembl Protein Viewer:ENSMUSP00000108940.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113314Re-query CCDS DB by Protein ID:ENSMUSP00000108940
Original member Current member NCBI NM_016771.3 NP_058051.3 Accepted alive Link to Nucleotide Sequence:NM_016771.3Link to Protein Sequence:NP_058051.3Re-query CCDS DB by Nucleotide ID:NM_016771Re-query CCDS DB by Protein ID:NP_058051Link to BLAST:NP_058051.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058051.3 295 Q3UZZ6 295 100% 0 0

Chromosomal Locations for CCDS 39130.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87555937 87556049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87556854 87557034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87558488 87558582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87559761 87559887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87563870 87563967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87564710 87564835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87566036 87566183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGATAACAAACTGGATGTCTTCAGGAGGGAGTTAGTGGATGTTGAAGGTATCCCTCTCTTTTGGAGCA
TTGCTGAGCATTGGTCCCAAGTAGAGTCATTTGAAGCCCGGCCTGATGACATTTTGATCTCCACATATCC
CAAATCTGGAACAACTTGGGTCAGTGAAATACTGGATTTGATCTACAACAATGGGGATGCAGAGAAATGT
AAAAGGGATGCAATCTACAAACGAGTACCATTCATGGAGCTTATAATTCCTGGGATAACAAATGGAGTTG
AAATGCTGAACAACATGCCGTCTCCTCGAATAGTGAAAACACACCTTCCTGTTCAGCTGCTTCCTTCCTC
ATTCTGGAAAAATGACTGCAAGATTATTTATGTGGCACGGAATGCCAAAGATGTGGTTGTTTCTTACTAT
TATTTCTATCAAATGGCAAAAATCCACCCAGAGCCTGGCACCTGGGAAGAGTTCCTAGAGAAATTCATGG
CTGGACAAGTGAGCTTTGGTCCCTGGTATGATCATGTGAAGAGCTGGTGGGAAAAAAGAAAAGAATATCG
GATCCTTTACCTGTTTTATGAAGATATGAAAGAAAATCCAAAGTGTGAAATTCAAAAAATATTAAAGTTT
CTAGAAAAGGACATACCAGAAGAAATTTTAAATAAAATACTCTACCATAGCTCTTTCAGTGTAATGAAGG
AGAATCCTAGTGCAAATTACACTACTATGATGAAAGAAGAGATGGACCACTCTGTGTCTCCTTTCATGAG
AAAGGGAATTTCAGGCGATTGGAAGAATCAGTTCACTGTAGCCCAGTATGAGAAATTTGAAGAAGATTAT
GTCAAGAAAATGGAAGATTCAACACTGAAGTTTAGATCAGAGATCTAG

Translation (295 aa):
MDNKLDVFRRELVDVEGIPLFWSIAEHWSQVESFEARPDDILISTYPKSGTTWVSEILDLIYNNGDAEKC
KRDAIYKRVPFMELIIPGITNGVEMLNNMPSPRIVKTHLPVQLLPSSFWKNDCKIIYVARNAKDVVVSYY
YFYQMAKIHPEPGTWEEFLEKFMAGQVSFGPWYDHVKSWWEKRKEYRILYLFYEDMKENPKCEIQKILKF
LEKDIPEEILNKILYHSSFSVMKENPSANYTTMMKEEMDHSVSPFMRKGISGDWKNQFTVAQYEKFEEDY
VKKMEDSTLKFRSEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH