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Report for CCDS18267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18267.1 Public Mus musculus 4 Pappa 23 108 98 CCDS HistoryNCBI Gene:18491Re-query CCDS DB by CCDS ID:18267.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18267.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084501.3 ENSMUSP00000081545.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084501.3Link to Ensembl Protein Viewer:ENSMUSP00000081545.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084501Re-query CCDS DB by Protein ID:ENSMUSP00000081545
Original member NCBI NM_021362.1 NP_067337.1 Updated not alive Link to Nucleotide Sequence:NM_021362.1Link to Protein Sequence:NP_067337.1Re-query CCDS DB by Nucleotide ID:NM_021362Re-query CCDS DB by Protein ID:NP_067337
Current member NCBI NM_021362.2 NP_067337.1 Accepted alive Link to Nucleotide Sequence:NM_021362.2Link to Protein Sequence:NP_067337.1Re-query CCDS DB by Nucleotide ID:NM_021362Re-query CCDS DB by Protein ID:NP_067337Link to BLAST:NP_067337.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067337.1 1624 Q8R4K8-1 1624 100% 0 0

Chromosomal Locations for CCDS 18267.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 65124542 65124947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65155617 65156679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65176209 65176354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65180861 65181154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65189263 65189455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65196771 65196892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65204654 65205152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65231148 65231276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65237840 65237931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65261848 65262041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65293319 65293432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65294359 65294494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65297246 65297459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65305192 65305360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65307683 65307866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65314581 65314791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65316126 65316297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65323739 65323886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65326963 65327072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65335707 65335778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65340685 65340783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65351618 65351725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4875 nt):
ATGCGGCTCTGGAGTTGGGTGCTGCGCCTGGGGCTGCTGAGCGCCGCGCTGGGCTGCGGGCTGGCCGAGC
GCCCCCGCCGGGTCCGAAGAGACCCTCGGGCCGTGCGCCCCCCGCGCCCCGCCGCTGGACCGGCCACCTG
CGCCACCCGGGCGGCCCGCGGTCGCCGCGCCTCGCCGCCGCCGCCTCCGGGCGGTGCCTGGGAAGCCGTG
CGCGTCCCCCGGCGGCGGCAGCAGCGGGCGGCGAGGGGCGCCGAGGAGCCGAGCCCGCCTAGCCGGGCGC
TCTATTTCAGCGGGCGAGGGGAGCAGCTGCGCCTCCGGGCCGACCTGGAGCTACCCCGCGACGCCTTTAC
ACTGCAAGTGTGGCTGCGAGCCGAGGGTGGCCAGAAGTCTCCAGCAGTGATCACAGGGCTGTATGACAAA
TGTTCTTATACCTCACGTGATCGAGGATGGGTCATGGGCATTCACACCACCAGTGATCAAGGCAACAGAG
ATCCACGCTACTTTTTCTCCTTGAAGACAGACCGGGCCAGGAAAGTGACCACCATTGATGCCCATCGCAG
CTACCTCCCAGGTCAGTGGGTACATCTAGCTGCTACCTATGATGGGCGGCTGATGAAGCTCTATATGAAT
GGTGCCCAGGTGGCAACTTCGGCTGAGCAAGTAGGTGGCATATTCAGCCCACTGACCCAGAAGTGTAAAG
TGCTCATGTTGGGGGGCAGTGCTCTGAATCACAACTTCCGGGGCCACATTGAACACTTCAGTCTATGGAA
AGTAGCAAGAACCCAGCGAGAGATTGTATCCGACATGGAAACCCGTGGCCTCCACACCCCTCTACCTCAG
CTCCTCCTCCAGGAGAACTGGGACAACGTGAAGCGCACTTGGTCCCCCATGAAGGATGGCAACAGCCCCC
AGGTGGAATTCAGCAATGCCCACGGCTTCCTGTTGGACACTAATTTGGAGCCCCCTCTTTGTGGGCAGAC
ACTGTGTGACAACACAGAAGTCATCTCCAGTTACAATCAGCTCCCAAGTTTTCGGCAGCCCAAGGTGGTC
CGCTATCGTGTGGTCAACATCTATGATGATCACCATGAGAATCCAACGGTGAGCTGGCAACAGATTGACT
TTCAGCACCAACAGCTGGCTGAGGCCTTTCAACACTACAACATCTCCTGGGAGCTGGAGGTACTGAATAT
AAACAGTTCCTCTCTGCGTCACCGCCTCATCCTAGCCAACTGTGACATCAGCAAGATTGGGGATGAAAAA
TGTGATCCAGAATGTAACCATACACTGACTGGTCATGATGGTGGAGATTGCCGCCAGCTGCGCTACCCTG
CGTTCATGAAGAAGCAGCAGAATGGTGTGTGTGACATGGACTGTAACTACGAAAGGTTTAATTTTGATGG
TGGAGAGTGCTGTGACCCAGACATCACTGATGTCACTAAGACATGCTTTGATCCTGACTCTCCACACAGA
GCCTACTTGGATGTTAATGAGCTAAAGAACATTCTTAGACTGGACGGATCAACACATCTCAATATTTTCT
TTGCAAACTCTTCAGAGGAGGAGTTGGCAGGAGTGGCAACTTGGCCATGGGACAAGGAAGCCCTAATGCA
CTTGGGCGGTATTGTCTTGAACCCATCTTTCTATGGCATTCCCGGACACACCCACACCATGATTCATGAG
ATTGGGCATAGCCTGGGCCTCTATCACATCTTCCGTGGCATCTCAGAAATCCAGTCCTGCAGTGATCCCT
GCATGGAGACAGAGCCTTCATTTGAAACTGGAGACCTCTGCAATGATACCAACCCAGCCCCCAAACACAA
GTTTTGTGGAGACCCTGGACCAGGGAATGACACTTGTGGCTTTCATGGCTTCTTCAACACTCCTTACAAC
AACTTCATGAGCTACGCAGATGACGACTGTACAGACTCTTTCACGCCCAATCAAGTCTCCAGAATGCACT
GTTACCTGGACCTCGTATACCAGAGCTGGCAGCCCTCCAGAAAGCCAGCACCTGTAGCTCTTGCGCCCCA
GGTTGTGGGGCACACAATGGACTCTGTGATGCTAGAGTGGTTCCCACCCATCGATGGCCACTTCTTTGAA
AGAGAATTGGGATCAGCATGTGACCTTTGCCTAGAAGGGAGAATCCTGGTGCAATATGCTTTCAATGCCT
CCTCCCCCATGCCCTGTGGACCGTCAGGACACTGGAGTCCTCGGGAAGCAGAAGGTCACCCAGATGTTGA
ACAGCCCTGTAAATCCAGTGTCCGAACCTGGAGTCCAAATTCAGCTGTCAACCCACACACAGTTCCTCCA
GCCTGCCCTGAGCCACAAGGCTGCTACCTCGAGCTGGAATTTCGCTACCCTTTGGTCCCTGAGTCTCTGA
CCATCTGGGTAACCTTTGTCTCCAGTGATTGGGACTCTAGTGGAGCTGTCAATGACATCAAACTCTTGAC
TATCAGTGGAAAGAATATCTCTTTGGGTCCTCAGAATGTTTTCTGTGATATCCCACTTACCATCAGACTC
CGGGATGTGGGTGAGGAGGTATATGGCATCCAAATCTATACTCTTGATGAGCACCTGGAGATTGATGCAG
CAATGCTGACCTCCACTGTAGACAGTCCACTCTGCCTACAGTGTAAACCTCTGCAGTATAAAGTGCTTCG
AGACCCACCTCTGCTAGAAGATGTAGCCTCATTACTCCACCTCAACAGAAGATTCATGGACACGGATCTG
AAACTTGGCAGTGTGTACCAGTACCGGATTATCACCATTTCAGGAAATGAAGAGAGCGAGCCATCACCTG
CTGCCATATACACCCACGGAAGTGGGTACTGTGGTGATGGCGTTATCCAAAAAGACCAAGGAGAAGAATG
TGACGACATGAATAAGGTCAATGGGGATGGCTGCTCCCTTTTCTGCAAGCAAGAAGTTTCCTTCAACTGC
ATTGATGAACCCAGCCGGTGCTATTTCCATGATGGGGATGGGATGTGTGAAGAGTTTGAACAAAAAACTA
GCATTAAAGACTGTGGTGTCTACACGCCCCAGGGTTTCCTGGATCAGTGGGCATCCAATGCTTCAGTATC
TCATCAAGACCAGCAGTGCCCAGGTTGGGTTGTCATTGGGCAGCCAGCGGCATCTCAGGTGTGTCGAACC
AAGGTGATAGATCTCAGTGAAGGCATTTCCCAGCATGCTTGGTATCCTTGCACCATTACTTACCCATACT
ACCATCTGCCTCAGACCACATTCTGGCTCCAGACATATTTCTCTCAGCCAATGGTTGCTGCAGCTGTAAT
TATTCACCTGGTGACTGATGGGACATACTATGGGGACCAAAAGCAAGAGACCATCAGTGTGCAGTTGCTT
GATACCAAAGATCAAAGCCATGATCTAGGCCTCCATGTCTTGAGCTGCAGAAACAATCCCCTGATTATCC
CTGTGGTCCATGACCTCAGCCAGCCCTTCTACCACAGCCAGGCGGTACATGTGAGCTTCAGTTCGCCCCT
GGTCGCCATCTCGGGGGTGGCCCTCCGCTCTTTCGACAACTTTGACCCCGTCACCCTGAGCAGCTGCCAG
AGAGGAGAGACCTACAGCCCTGCTGAGCAGAGCTGTGTGCATTTTGCCTGTCAAGCTGCCGACTGCCCAG
AACTGGCCGTGGGGAATGCTTCTCTCAACTGTTCCAGCAACCACCACTACCATGGTGCCCAGTGCACTGT
GAGCTGCCAGACAGGTTATGTGCTGCAGATACAGCGGGACGATGAGCTAATCAAGAGCCAGGTAGGGCCA
AGCATCACAGTGACATGTACCGAGGGCAAATGGAACAAGCAGGTGGCATGTGAGCCGGTGGACTGTGGTA
TCCCAGATCACCATCACGTCTATGCTGCCTCCTTCTCCTGTCCAGAGGGTACCACCTTTGGTAGAAGATG
TTCTTTTCAGTGTCGCCACCCTGCCCAGCTGAAAGGCAACAACAGCTTTCTGACCTGTATGGAAGATGGA
CTGTGGTCCTTCCCAGAGGCCTTGTGTGAGCTCATGTGCCTCGCCCCACCCCCAGTTCCCAATGCGGACC
TACAGACAGCCCGGTGTCGAGAGAACAAGCACAAGGTGGGCTCCTTCTGCAAGTACAAGTGTAAACCTGG
ATACCACGTGCCTGGCTCATCTCGGAAGTCCAAGAAACGGGCTTTCAAGACTCAATGTACTCAAGATGGC
AGCTGGCAAGAGGGAACTTGTGTGCCGGTGACTTGTGACCCACCTCCACCCAAATTCCATGGGCTCTATC
AATGCACTAATGGCTTCCAGTTCAATAGTGAGTGCAGGATCAAGTGTGAAGACAGTGATGCCTCCCAGGG
CCGTGGGAGCAATATCATTCACTGCCGGAAAGATGGCACTTGGAGTGGTTCCTTCCACGTCTGCCGAGAG
ATGCAAGGCCAGTGCTCAGCCCCAAACCAACTCAACAGTAACCTCAAATTGCAGTGTCCTGATGGCTATG
CAATAGGGTCAGAGTGTGCCATCTCGTGCCTGGACCATAACAGCGAGTCCATCATCCTTCCCGTTAACTT
GACAGTGCGTGACATACCCCATTGGATGAACCCCACACGAGTACAGAGGATTGTCTGCACTGCTGGTCTC
CAGTGGTATCCCCACCCTGCTCTGATCCACTGTGTCAAAGGCTGTGAGCCATTCATGGGAGACAACTACT
GTGATGCCATCAACAATCGAGCCTTCTGCAACTATGATGGTGGGGACTGCTGCACCTCCACAGTAAAGAC
CAAAAAGGTCACTCCCTTTCCTATGTCCTGTGACCTACAAAATGACTGCGCCTGTCGAGACCCTGAGGCC
CAAGAACACAACCGGAAAGATCTTCGGGGATATAGCCATGGCTAA

Translation (1624 aa):
MRLWSWVLRLGLLSAALGCGLAERPRRVRRDPRAVRPPRPAAGPATCATRAARGRRASPPPPPGGAWEAV
RVPRRRQQRAARGAEEPSPPSRALYFSGRGEQLRLRADLELPRDAFTLQVWLRAEGGQKSPAVITGLYDK
CSYTSRDRGWVMGIHTTSDQGNRDPRYFFSLKTDRARKVTTIDAHRSYLPGQWVHLAATYDGRLMKLYMN
GAQVATSAEQVGGIFSPLTQKCKVLMLGGSALNHNFRGHIEHFSLWKVARTQREIVSDMETRGLHTPLPQ
LLLQENWDNVKRTWSPMKDGNSPQVEFSNAHGFLLDTNLEPPLCGQTLCDNTEVISSYNQLPSFRQPKVV
RYRVVNIYDDHHENPTVSWQQIDFQHQQLAEAFQHYNISWELEVLNINSSSLRHRLILANCDISKIGDEK
CDPECNHTLTGHDGGDCRQLRYPAFMKKQQNGVCDMDCNYERFNFDGGECCDPDITDVTKTCFDPDSPHR
AYLDVNELKNILRLDGSTHLNIFFANSSEEELAGVATWPWDKEALMHLGGIVLNPSFYGIPGHTHTMIHE
IGHSLGLYHIFRGISEIQSCSDPCMETEPSFETGDLCNDTNPAPKHKFCGDPGPGNDTCGFHGFFNTPYN
NFMSYADDDCTDSFTPNQVSRMHCYLDLVYQSWQPSRKPAPVALAPQVVGHTMDSVMLEWFPPIDGHFFE
RELGSACDLCLEGRILVQYAFNASSPMPCGPSGHWSPREAEGHPDVEQPCKSSVRTWSPNSAVNPHTVPP
ACPEPQGCYLELEFRYPLVPESLTIWVTFVSSDWDSSGAVNDIKLLTISGKNISLGPQNVFCDIPLTIRL
RDVGEEVYGIQIYTLDEHLEIDAAMLTSTVDSPLCLQCKPLQYKVLRDPPLLEDVASLLHLNRRFMDTDL
KLGSVYQYRIITISGNEESEPSPAAIYTHGSGYCGDGVIQKDQGEECDDMNKVNGDGCSLFCKQEVSFNC
IDEPSRCYFHDGDGMCEEFEQKTSIKDCGVYTPQGFLDQWASNASVSHQDQQCPGWVVIGQPAASQVCRT
KVIDLSEGISQHAWYPCTITYPYYHLPQTTFWLQTYFSQPMVAAAVIIHLVTDGTYYGDQKQETISVQLL
DTKDQSHDLGLHVLSCRNNPLIIPVVHDLSQPFYHSQAVHVSFSSPLVAISGVALRSFDNFDPVTLSSCQ
RGETYSPAEQSCVHFACQAADCPELAVGNASLNCSSNHHYHGAQCTVSCQTGYVLQIQRDDELIKSQVGP
SITVTCTEGKWNKQVACEPVDCGIPDHHHVYAASFSCPEGTTFGRRCSFQCRHPAQLKGNNSFLTCMEDG
LWSFPEALCELMCLAPPPVPNADLQTARCRENKHKVGSFCKYKCKPGYHVPGSSRKSKKRAFKTQCTQDG
SWQEGTCVPVTCDPPPPKFHGLYQCTNGFQFNSECRIKCEDSDASQGRGSNIIHCRKDGTWSGSFHVCRE
MQGQCSAPNQLNSNLKLQCPDGYAIGSECAISCLDHNSESIILPVNLTVRDIPHWMNPTRVQRIVCTAGL
QWYPHPALIHCVKGCEPFMGDNYCDAINNRAFCNYDGGDCCTSTVKTKKVTPFPMSCDLQNDCACRDPEA
QEHNRKDLRGYSHG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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