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Report for CCDS27085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27085.1 Public Mus musculus 14 Or6e1 23 108 98 CCDS HistoryNCBI Gene:18348Re-query CCDS DB by CCDS ID:27085.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27085.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059996.6 ENSMUSP00000054361.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059996.6Link to Ensembl Protein Viewer:ENSMUSP00000054361.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059996Re-query CCDS DB by Protein ID:ENSMUSP00000054361
Original member Current member EBI ENSMUST00000216214.1 ENSMUSP00000149840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216214.1Link to Ensembl Protein Viewer:ENSMUSP00000149840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216214Re-query CCDS DB by Protein ID:ENSMUSP00000149840
Original member Current member NCBI NM_010991.2 NP_035121.1 Accepted alive Link to Nucleotide Sequence:NM_010991.2Link to Protein Sequence:NP_035121.1Re-query CCDS DB by Nucleotide ID:NM_010991Re-query CCDS DB by Protein ID:NP_035121Link to BLAST:NP_035121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035121.1 313 Q9Z1V0 313 100% 0 0

Chromosomal Locations for CCDS 27085.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54281952 54282893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGCGAACAGCACTACTGTTACTGAGTTTATTTTGCTGGGGCTGTCAGATGCCTGTGAGCTGCAGGTGC
TCATATTCCTGGGCTTTCTCCTGACCTACTTCCTCATTCTGCTGGGAAACTTCCTCATCATCTTCATCAC
CCTTGTGGACAGGCGCCTTTACACCCCCATGTATTACTTCCTCCGCAACTTTGCCATGCTGGAGATCTGG
TTCACCTCTGTCATCTTCCCCAAGATGCTAACCAACATCATCACAGGACATAAGACCATCTCCCTACTAG
GTTGTTTCCTCCAAGCATTCCTCTATTTCTTCCTTGGCACCACTGAGTTCTTTCTACTGGCAGTGATGTC
CTTTGACAGGTATGTGGCCATTTGTAACCCTTTGCGTTATGCCACCATTATGAGCAAAAGAGTCTGTGTC
CAGCTTGTGTTTTGCTCATGGATGTCTGGATTGCTTCTCATCATAGTTCCTAGTTCAATTGTATTTCAGC
AGCCGTTCTGTGGCCCAAACATCATTAATCATTTCTTCTGTGACAACTTTCCACTTATGGAACTCATATG
TGCAGATACCAGCCTGGTAGAGTTCCTGGGTTTTGTTATTGCCAATTTCAGCCTCCTGGGCACTCTGGCT
GTGACTGCCACCTGCTATGGCCACATTCTCTATACCATTCTACACATTCCTTCAGCCAAGGAGAGGAAGA
AAGCCTTCTCAACTTGCTCCTCTCATATTATTGTGGTGTCTCTCTTCTATGGCAGCTGTATCTTCATGTA
TGTCCGGTCTGGCAAGAATGGACAGGGGGAGGATCATAACAAGGTGGTGGCATTGCTCAACACTGTAGTG
ACACCCACACTCAACCCCTTCATCTACACTCTGAGGAACAAGCAGGTGAAGCAGGTATTTAGGGAACACG
TAAGCAAGTTCCAAAAGTTCAGCCAGACATGA

Translation (313 aa):
MANSTTVTEFILLGLSDACELQVLIFLGFLLTYFLILLGNFLIIFITLVDRRLYTPMYYFLRNFAMLEIW
FTSVIFPKMLTNIITGHKTISLLGCFLQAFLYFFLGTTEFFLLAVMSFDRYVAICNPLRYATIMSKRVCV
QLVFCSWMSGLLLIIVPSSIVFQQPFCGPNIINHFFCDNFPLMELICADTSLVEFLGFVIANFSLLGTLA
VTATCYGHILYTILHIPSAKERKKAFSTCSSHIIVVSLFYGSCIFMYVRSGKNGQGEDHNKVVALLNTVV
TPTLNPFIYTLRNKQVKQVFREHVSKFQKFSQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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