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Report for CCDS23636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23636.1 Public Mus musculus 9 Nktr 23 108 98 CCDS HistoryNCBI Gene:18087Re-query CCDS DB by CCDS ID:23636.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035112.12 ENSMUSP00000035112.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035112.12Link to Ensembl Protein Viewer:ENSMUSP00000035112.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035112Re-query CCDS DB by Protein ID:ENSMUSP00000035112
Original member NCBI NM_010918.2 NP_035048.3 Updated not alive Link to Nucleotide Sequence:NM_010918.2Link to Protein Sequence:NP_035048.3Re-query CCDS DB by Nucleotide ID:NM_010918Re-query CCDS DB by Protein ID:NP_035048
Current member NCBI NM_010918.3 NP_035048.3 Accepted alive Link to Nucleotide Sequence:NM_010918.3Link to Protein Sequence:NP_035048.3Re-query CCDS DB by Nucleotide ID:NM_010918Re-query CCDS DB by Protein ID:NP_035048Link to BLAST:NP_035048.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035048.3 1453 P30415 1453 100% 0 0

Chromosomal Locations for CCDS 23636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121719488 121719545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121727316 121727390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121728578 121728685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121729636 121729680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121731478 121731565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121741122 121741151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121741598 121741743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121742565 121742787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121743989 121744144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121745901 121745988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121746445 121746590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121748031 121750886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121751667 121751762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121752407 121752463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121752991 121753092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121754245 121754332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4362 nt):
ATGGGCGCCCAGGACCGGCCGCAGTGTCACTTCGACATCGAGATCAACCGGGAACCGGTTGGTCGAATTA
TGTTTCAGCTCTTCTCAGACATATGTCCAAAAACATGCAAAAACTTCCTATGCCTGTGCTCAGGGGAGAA
AGGCCTTGGGAAAACAACTGGGAAGAAGTTATGTTATAAAGGTTCTACATTCCACCGTGTGGTTAAAAAC
TTTATGATTCAGGGTGGGGACTTCAGTGAAGGTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACT
TTAAAGATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACA
TACCAATGGTTCCCAGTTTTTCATAACTACAAAGCCTGCTCCACACCTGGATGGGGTTCATGTTGTTTTT
GGACTGGTAATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACAGATGCTGCAAGCAGAC
CTTATGCAGATGTCCGAGTTATTGACTGTGGGGTGCTGGCCACAAAGTTGACAAAAGATGTTTTTGAGAA
AAAAAGGAAGAAACCAACCTGTTCAGAAGGCTCGGACTCTTCTTCCCGTTCCTCTTCCTCTTCAGAGTCC
TCCTCAGAGAGTGAAGTTGAGCGAGAGACAATCAGAAGGAGAAGACATAAGAGGAGGCCAAAAGTCAGAC
ATGCTAAAAAGAGACGGAAAGAAATGAGCAGTTCAGAAGAACCGAGGAGGAAGCGCACAGTAAGCCCTGA
AGGTTATTCTGAGAGGAGTGATGTGAATGAAAAAAGATCAGTTGACTCAAACACTAAAAGAGAAAAGCCT
GTTGTCCGCCCAGAAGAGATTCCTCCAGTTCCCGAGAACCGATTTTTACTTAGAAGAGATATGCCTGCTA
TCACTGTGGAGCCTGAACAGAACATTCCAGATGTTGCACCTGTTGTAAGTGATCAGAAACCCTCTGTATC
AAAGTCTGGACGGAAAATCAAAGGAAGAGGCACGATTCGCTATCACACACCTCCAAGGTCAAGATCCCAC
TCTGAGTCCAAAGATGATGACAGCAGTGAAACCCCTCCTCACTGGAAGGAGGAGATGCAGAGACTGAGAG
CCTACAGGCCCCCGAGCGGAGAGAAGTGGAGCAAAGGAGACAAGCTGAGTGACCCCTGTTCAAGCCGATG
GGATGAAAGAAGCCTGTCCCAGAGATCCAGATCATGGTCCTATAATGGATACTATTCAGATCTTAGTACA
GCGAGACACTCTGATGGTCACCATAAGAAACACAGAAAGGAAAAGAAGTTTAAGCATAAAAAAAAAGCTA
AAAAGCAGAAACATTGCAGAAGACACAGACAGACAAAAAAGAGGAGAATAGTTATGCCTGATTTGGAACC
CTCAAGATCTCCCACCCACCGAATGAAGTCCTCTTGTGTTAGAGAAAGGAGATCTCGTGCCTCCTCCTCC
TCCTCTCATCACTCATCCAAGCGCGACTGGTCTAAATCAGACCAGGATGACGGGAGTGCTTCAACCCATT
CCAGCAGAGACTCCTACAGATCCAAGTCTCATTCACGATCAGATTCTAGAGGGAGCTCTAGATCAAGGGC
TGTGTCAAAGTCCTCATCTCGTTCTCTCAACAGATCAAAATCTAGATCTAGTTCCAGGTCAGGACCCCGA
AGAACATCAATATCCCCCAAAAAACCTGCTCAGCTGAGTGAAAATAAGCCAGTTAAGACAGAACCTTTAA
GGCCGTCAGTGCCACAGAATGGAAATGTGCTAGTGCAACCAGTGGCAGCAGAAAACATTCCTGTAATACC
ATTGAGTGACAGCCCTCCCCCTTCTAGGTGGAAGCCTGGGCAGAAGCCCTGGAAGCCCTCTTACGAGCGA
ATTCAGGAGATGAAAGCTAAAACAACCCACTTGCTGCCTGTCCAAAGCACATACAGCTTAACAAATATTA
AAGCAACCGTGAGTTCATCATCTTATCACAAAAGAGAAAAACCTTCAGAAAGTGATGGGAGTGCTTATTC
AAAGTACAGTGATAGAAGTTCTGGAAGCTCAGGAAGGTCGGGGAGCAAGTCTTCTAGGAGCAGGTCATCC
TCCAGGTCCTACACAAGGTCAAGGTCAAGAAGTCTCCCTACTTCACGCTCACTCTCTAGGTCTCCATCAT
CTAGGTCTCACTCACCAAATAAGTACAGTGATGGTTCCCAGCACAGTAGGTCATCTTCATATACTTCTGT
TAGCAGTGATGATGGAAGACGAGCCATGTTTAGATCCAACAGGAAAAAAAGTGTCACTTCACATAAAAGA
CATCGCAGCAACTCTGAAAAGACACTTCACAGTAAATATGTCAGAGGCAGAGAGAAATCCTCACGTCACA
GAAAGTATAGTGAAAGTAGATCATCTTTAGATTACTCTTCAGACAGTGACCAGTCACATGTTCAAGTATA
CTCAGCCCCAGAGAAGGAGAAGCAGGGAAAAGTGGAAGCATTGAATGATAAGCAGGGGAAAGGCAGAGAA
GAAGGAAAACCCAAGCCTGAATGGGAATGTCCTCGTTCTAAAAAGAGAACTCCGAAAGATCACTCTAGAG
ATGACAGTGTGTCCAAAGGGAAGAATTGTGCGGGGAGTAAATGGGATTCGGAATCAAACTCAGAACAAGA
TGTGACTAAGAGCAGGAAAAGTGATCCCCGGAGAGGTTCAGAAAAGGAGGAGGGTGAAGCCTCTTCAGAC
TCCGAGTCAGAAGTTGGTCAGAGTCACATCAAAGCCAAACCCCCAGCAAAGCCTCCAACAAGCACTTTTC
TGCCCGGCAGCGACGGTGCCTGGAAGTCTAGGAGACCACAGTCTTCAGCCTCTGAGTCAGAGAGCTCCTG
CTCCAACTTGGGGAACATTAGAGGAGAGCCCCAGAAGCAAAAACACTCAAAGGATGATCTTAAGGGGGAT
CACACAAAAAGGGCAAGAGAGAAGTCAAAAGCTAAAAAAGACAAAAAACACAAGGCTCCAAAACGGAAGC
AAGCTTTCCACTGGCAACCTCCACTCGAGTTTGGTGACGATGAGGAGGAGGAGATGAATGGGAAGCAAGT
TACACAGGACCCAAAAGAGAAAAGGCATGTCTCTGAGAAGTGTGAAGCTGTGAAAGACGGCATTCCAAAC
GTCGAGAAAACCTGTGATGAAGGCAGTTCTCCAAGTAAACCCAAGAAGGGTACTTTAGAGCAGGACCCAC
TTGCAGAGGGTGGACATGATCCCAGCTCTTGTCCTGCACCTCTGAAAGTGGAGGACAACACGGCCAGCTC
TCCACCTAGCGCCCAGCACCTTGAAGAGCATGGCCCAGGTGGAGGGGAGGACGTGCTTCAGACAGATGAC
AACATGGAGATTTGCACGCCTGATAGGACTTCCCCTGCAAAGGGAGAGGTGGTGTCCCCTTTAGCAAACC
ACAGGCTAGACAGCCCAGAGGTGAACATTATTCCAGAGCAGGATGAGTGTATGGCACATCCTAGAGCAGG
AGGAGAACAAGAGAGTAGCATGTCTGAAAGCAAGACCTTGGGTGAAAGTGGGGTTAAACAGGACAGCTCT
ACCAGTGTGACCAGTCCTGTAGAAACTTCTGGAAAGAAGGAGGGGGCTGAGAAGAGCCAAATGAACCTCA
CAGATAAGTGGAAGCCATTGCAAGGTGTAGGGAATCTGTCAGTGTCTACTGCAACCACATCCAGTGCTCT
GGATGTGAAGGCATTATCTACTGTGCCTGAAGTGAAACCACAAGGCTTGAGGATAGAAATCAAAAGCAAA
AATAAGGTTCGGCCTGGGTCTCTCTTTGATGAAGTAAGAAAGACGGCACGCCTAAATCGAAGGCCACGGA
ATCAAGAGAGTTCCAGTGATGATCAGACACCTAGTCGGGATGGTGATAGCCAGTCCAGGAGTCCACACAG
ATCTCGAAGCAAATCCGAAACCAAATCTCGACACAGAACAAGGTCTGTCTCATACAGTCACTCACGAAGT
CGATCTAGAAGCTCTACGTCATCTTACCGATCAAGAAGCTACTCTAGAAGCCGGAGCAGGGACTGGTATA
GCAGAGGCCGAACCCGCAGCCGGAGCAGTTCCTATGGAAGTTTCCATAGTCACAGGACGTCCAGCAGGAG
CCGGTCCAGGAGCAGCTCTTATGACCTCCATAGCCGCTCCAGATCCTACACCTACGATAGCTACTACAGC
CGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGT
CCAGGAGTGGTAGATCCTATGGCTCAGACAGTGAAAGTGACAGAAGTTACTCTCATCACCGGAGTCCCAG
CGAGAGCAGCAGATACAGCTGA

Translation (1453 aa):
MGAQDRPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN
FMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVF
GLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATKLTKDVFEKKRKKPTCSEGSDSSSRSSSSSES
SSESEVERETIRRRRHKRRPKVRHAKKRRKEMSSSEEPRRKRTVSPEGYSERSDVNEKRSVDSNTKREKP
VVRPEEIPPVPENRFLLRRDMPAITVEPEQNIPDVAPVVSDQKPSVSKSGRKIKGRGTIRYHTPPRSRSH
SESKDDDSSETPPHWKEEMQRLRAYRPPSGEKWSKGDKLSDPCSSRWDERSLSQRSRSWSYNGYYSDLST
ARHSDGHHKKHRKEKKFKHKKKAKKQKHCRRHRQTKKRRIVMPDLEPSRSPTHRMKSSCVRERRSRASSS
SSHHSSKRDWSKSDQDDGSASTHSSRDSYRSKSHSRSDSRGSSRSRAVSKSSSRSLNRSKSRSSSRSGPR
RTSISPKKPAQLSENKPVKTEPLRPSVPQNGNVLVQPVAAENIPVIPLSDSPPPSRWKPGQKPWKPSYER
IQEMKAKTTHLLPVQSTYSLTNIKATVSSSSYHKREKPSESDGSAYSKYSDRSSGSSGRSGSKSSRSRSS
SRSYTRSRSRSLPTSRSLSRSPSSRSHSPNKYSDGSQHSRSSSYTSVSSDDGRRAMFRSNRKKSVTSHKR
HRSNSEKTLHSKYVRGREKSSRHRKYSESRSSLDYSSDSDQSHVQVYSAPEKEKQGKVEALNDKQGKGRE
EGKPKPEWECPRSKKRTPKDHSRDDSVSKGKNCAGSKWDSESNSEQDVTKSRKSDPRRGSEKEEGEASSD
SESEVGQSHIKAKPPAKPPTSTFLPGSDGAWKSRRPQSSASESESSCSNLGNIRGEPQKQKHSKDDLKGD
HTKRAREKSKAKKDKKHKAPKRKQAFHWQPPLEFGDDEEEEMNGKQVTQDPKEKRHVSEKCEAVKDGIPN
VEKTCDEGSSPSKPKKGTLEQDPLAEGGHDPSSCPAPLKVEDNTASSPPSAQHLEEHGPGGGEDVLQTDD
NMEICTPDRTSPAKGEVVSPLANHRLDSPEVNIIPEQDECMAHPRAGGEQESSMSESKTLGESGVKQDSS
TSVTSPVETSGKKEGAEKSQMNLTDKWKPLQGVGNLSVSTATTSSALDVKALSTVPEVKPQGLRIEIKSK
NKVRPGSLFDEVRKTARLNRRPRNQESSSDDQTPSRDGDSQSRSPHRSRSKSETKSRHRTRSVSYSHSRS
RSRSSTSSYRSRSYSRSRSRDWYSRGRTRSRSSSYGSFHSHRTSSRSRSRSSSYDLHSRSRSYTYDSYYS
RSRSRSRSQRSDSYHRGRSYNRRSRSGRSYGSDSESDRSYSHHRSPSESSRYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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