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Report for CCDS2306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2306.1 Public Homo sapiens 2 MFSD6 24 110 108 CCDS HistoryNCBI Gene:54842Re-query CCDS DB by CCDS ID:2306.1Re-query CCDS DB by GeneID:54842See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2306.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281416.11 ENSP00000281416.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000281416.11Link to Ensembl Protein Viewer:ENSP00000281416.7Re-query CCDS DB by Nucleotide ID:ENST00000281416Re-query CCDS DB by Protein ID:ENSP00000281416
Original member Current member EBI ENST00000392328.6 ENSP00000376141.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392328.6Link to Ensembl Protein Viewer:ENSP00000376141.1Re-query CCDS DB by Nucleotide ID:ENST00000392328Re-query CCDS DB by Protein ID:ENSP00000376141
Original member Current member NCBI NM_001375986.1 NP_001362915.1 Accepted alive Link to Nucleotide Sequence:NM_001375986.1Link to Protein Sequence:NP_001362915.1Re-query CCDS DB by Nucleotide ID:NM_001375986Re-query CCDS DB by Protein ID:NP_001362915Link to BLAST:NP_001362915.1
Original member Current member NCBI NM_001375987.1 NP_001362916.1 Accepted alive Link to Nucleotide Sequence:NM_001375987.1Link to Protein Sequence:NP_001362916.1Re-query CCDS DB by Nucleotide ID:NM_001375987Re-query CCDS DB by Protein ID:NP_001362916Link to BLAST:NP_001362916.1
Original member Current member NCBI NM_001375988.1 NP_001362917.1 Accepted alive Link to Nucleotide Sequence:NM_001375988.1Link to Protein Sequence:NP_001362917.1Re-query CCDS DB by Nucleotide ID:NM_001375988Re-query CCDS DB by Protein ID:NP_001362917Link to BLAST:NP_001362917.1
Original member Current member NCBI NM_017694.4 NP_060164.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017694.4Link to Protein Sequence:NP_060164.3Re-query CCDS DB by Nucleotide ID:NM_017694Re-query CCDS DB by Protein ID:NP_060164Link to BLAST:NP_060164.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362915.1 791 Q6ZSS7 791 100% 0 0
NP_001362916.1 791 Q6ZSS7 791 100% 0 0
NP_001362917.1 791 Q6ZSS7 791 100% 0 0
NP_060164.3 791 Q6ZSS7 791 100% 0 0

Chromosomal Locations for CCDS 2306.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 190436030 190437561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190469758 190469855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190488657 190488818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190489768 190489866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190497439 190497719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190500015 190500218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGGCAGATGATAAAGTTGCTATCTTAACGGATGATGAAGAGGAACAGAAGAGAAAGTATGTGCTTGCAG
ATCCCTTTAATGGTATTTCCAGGGAACCAGAACCACCTTCGAATGAAACACCTTCCTCCACAGAAACATC
TGCTATTCCTGAGGAGGAAATAGACTGGATAGAGAAACATTGTGTTAAGATAAACAACGATCTTCTAATT
TCCAAGGTCTTTTATTTTTTCTTTTACTCTGCCTATGGCTCTCTCTATCCCCTTTTGCCTGTGTATTACA
AACAGCTGGGAATGTCTCCAAGCCAGAGTGGACTACTAGTAGGTATTCGTTACTTCATTGAATTCTGCAG
TGCCCCCTTTTGGGGTGTAGTTGCAGACCGCTTTAAAAAAGGCAAAATTGTCCTCCTCTTTTCTCTTTTG
TGTTGGGTTTTATTCAACCTGGGCATTGGATTTGTCAAACCTGCTACCTTGAGATGTGTACCAAAGATTC
GCCCAACAACTCACCCCACCAATGCAAGTCACCAGTTAACTATCCTGCCAACAAATTCTTCCTTTACCTC
TTTCCTCACCATATCACCAAAAATGCGTGAGAAAAGAAACCTTTTGGAAACAAGGCTCAATGTCTCAGAC
ACCGTTACTTTGCCAACAGCTCCAAACATGAACAGTGAACCCACTCTGCAGCCCCAGACAGGTGAAATTA
CTAACCGTATGATGGACTTGACTTTGAACTCAAGCACAGCAACCCCTGTCTCCCCAGGAAGCGTAACCAA
GGAGACAACCACTGTTATTGTTACCACCACCAAATCTTTACCTTCTGACCAAGTCATGCTTGTTTATGAT
CAACAAGAAGTTGAAGCTATATTCTTGGTGATCTTGGTAGTTGTCATAATAGGAGAATTTTTCAGTGCCT
CTTCTGTCACAATCGTAGACACGGTCACACTCCAGTATCTGGGAAAACACAGAGATCGCTATGGGTTGCA
GCGCATGTGGGGCTCCCTGGGCTGGGGCCTGGCGATGCTGTCTGTGGGCATCGGGATCGACTACACCCAC
ATCGAAGTGCTCATCGATGGAAAGGGGTGTAAGCCCCCCGAGTACAGGAATTACCAGATCGTCTTCATCG
TCTTCGGCGTTCTCATGACCATGGCCTTGATCGTTGCCACTCAGTTCCGGTTCCGCTACAACCATTTCAA
AAACGATGATTCTAAAGGGAAAGAGGTGGAGATCCCGCAGGTGGAAAGGAACAACTCTACAGAGTCCTCT
GAGGAGACACCAACCACCACAAGCCACTCGCAGGCCTTCAACTTTTGGGACTTAATCAAGCTGCTCTGCA
GCGTGCAGTATGGCTCAGTGCTGTTTGTGGCTTGGTTCATGGGTTTTGGATATGGCTTCGTGTTCACCTT
TCTCTACTGGCATTTGGAAGACCTCAATGGAACTACAACCCTCTTTGGGGTCTGTTCAGTCCTGAGTCAT
GTGTCTGAGCTGACAGCATATTTTTTTAGTCACAAGCTTATTGAATTGATCGGCCACATCAGGGTTCTGT
ACATTGGCCTGGCCTGCAATACGGCTCGCTATATTTATATTTCCTACCTGGAGAATGCCTGGACTGTTCT
CCCCATGGAAGTTCTTCAAGGAGTGACACACGCGGCCATCTGGGCAGCATGCATTTCTTACCTCAGTGCA
GCCGTTCCCCCTGAGCTGAGGACATCTGCTCAGGGCATCCTGCAGGGCCTTCACCTGGGTTTGGGAAGAG
GATGTGGTGCCATGATCGGAGGCGTGTTAGTCAATTATTTTGGGGCTGCTGCAACCTTCCGAGGAATTGG
CATGGCCTGCTTGGTGATCCTACTGCTCTTTGCCCTGATCCAGTGGCTGGCAGTGCCAGATGAGGAAGAA
GACAAGACAATGTTGGCAGAAAGAATTCCTGTTCCCTCCAGTCCCGTTCCTATAGCAACCATCGACTTGG
TACAGCAACAGACAGAAGATGTCATGCCACGCATTGAGCCCAGACTTCCACCCAAGAAAACTAAGCACCA
GGAAGAACAGGAAGATGTGAACAAACCAGCCTGGGGAGTCAGCTCTTCTCCCTGGGTGACCTTTGTCTAT
GCACTCTACCAAATTAAAGAGATGATGCAACTCACAAGAGACAACCGTGCTTCTGAGATACAGCCTTTAC
AGGGGACCAATGAGAATAGGGAAAATTCTCCTGCTGGTAGAGCCCAGCCTGTCCCATGTGAGACTCACTC
TGACCCATCTAGAAACCAGCCATCCCCTGACGCAGCAGCATCTCAGACGCAGACCAGCCCCGCTCACCCC
AGTGTGGACCCGTGCACAGAGGAGAGTGAAGAGCAGCAGGCTCAGCTGGCCGCGGGAGGACACTGA

Translation (791 aa):
MADDKVAILTDDEEEQKRKYVLADPFNGISREPEPPSNETPSSTETSAIPEEEIDWIEKHCVKINNDLLI
SKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKIVLLFSLL
CWVLFNLGIGFVKPATLRCVPKIRPTTHPTNASHQLTILPTNSSFTSFLTISPKMREKRNLLETRLNVSD
TVTLPTAPNMNSEPTLQPQTGEITNRMMDLTLNSSTATPVSPGSVTKETTTVIVTTTKSLPSDQVMLVYD
QQEVEAIFLVILVVVIIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTH
IEVLIDGKGCKPPEYRNYQIVFIVFGVLMTMALIVATQFRFRYNHFKNDDSKGKEVEIPQVERNNSTESS
EETPTTTSHSQAFNFWDLIKLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSH
VSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSA
AVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNYFGAAATFRGIGMACLVILLLFALIQWLAVPDEEE
DKTMLAERIPVPSSPVPIATIDLVQQQTEDVMPRIEPRLPPKKTKHQEEQEDVNKPAWGVSSSPWVTFVY
ALYQIKEMMQLTRDNRASEIQPLQGTNENRENSPAGRAQPVPCETHSDPSRNQPSPDAAASQTQTSPAHP
SVDPCTEESEEQQAQLAAGGH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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