NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS90100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90100.1 Public Mus musculus 6 Cidec 23 108 98 CCDS HistoryNCBI Gene:14311Re-query CCDS DB by CCDS ID:90100.1Re-query CCDS DB by GeneID:14311See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113091.7 ENSMUSP00000108714.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113091.7Link to Ensembl Protein Viewer:ENSMUSP00000108714.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113091Re-query CCDS DB by Protein ID:ENSMUSP00000108714
Current member NCBI NM_001372264.1 NP_001359193.1 Accepted alive Link to Nucleotide Sequence:NM_001372264.1Link to Protein Sequence:NP_001359193.1Re-query CCDS DB by Nucleotide ID:NM_001372264Re-query CCDS DB by Protein ID:NP_001359193Link to BLAST:NP_001359193.1

Chromosomal Locations for CCDS 90100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113425562 113425724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113428121 113428311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113428395 113428553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113433060 113433213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113434435 113434512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113434730 113434734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGAGTCCAACACAATCCAACTGACAAGGATGGACTACGCCATGAAGTCTCTCAGCCTCCTGTACCCCA
GGTCGCTGTCCAGGCATGTGGCAGTGAGCACGGCAGTGGTGACCCAACAGCTGGTGTCTAAGCCCAGCCG
GGAGACCCCGAGGGCCAGGCCCTGTCGTGTTAGCACCGCAGATCGGAAGGTTCGCAAAGGCATCATGGCT
CACAGCTTGGAGGACCTCCTGAACAAGGTCCAGGACATCTTGAAACTTAAAGACAAGCCCTTCTCCCTGG
TGCTGGAGGAAGATGGCACAATCGTGGAGACAGAAGAATACTTCCAAGCCCTGGCAAAAGATACCATGTT
CATGGTCCTGCTGAAGGGGCAGAAGTGGAAGCCCCCATCAGAACAGCGCAAGAAGAGAGCCCAGCTAGCC
CTTTCCCAGAAGCCAACTAAGAAGATCGATGTGGCCCGGGTAACCTTCGACCTGTACAAGCTGAACCCTC
AGGACTTTATTGGCTGCCTGAACGTGAAGGCAACCCTCTATGACACATACTCGCTTTCCTATGACCTGCA
CTGCTACAAGGCCAAGCGCATCGTGAAGGAGATGCTCCGCTGGACCCTCTTCAGCATGCAGGCCACCGGT
CACATGCTGCTTGGCACCTCCAGCTACATGCAGCAGTTCCTGGATGCCACCGAGGAAGAACAGCCTGCCA
AGGCCAAGCCCTCCTCCCTCCTCCCAGCCTGTCTGAAGATGCTGCAATGA

Translation (249 aa):
MESNTIQLTRMDYAMKSLSLLYPRSLSRHVAVSTAVVTQQLVSKPSRETPRARPCRVSTADRKVRKGIMA
HSLEDLLNKVQDILKLKDKPFSLVLEEDGTIVETEEYFQALAKDTMFMVLLKGQKWKPPSEQRKKRAQLA
LSQKPTKKIDVARVTFDLYKLNPQDFIGCLNVKATLYDTYSLSYDLHCYKAKRIVKEMLRWTLFSMQATG
HMLLGTSSYMQQFLDATEEEQPAKAKPSSLLPACLKMLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH