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Report for CCDS18116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18116.1 Public Mus musculus 4 Reck 23 108 98 CCDS HistoryNCBI Gene:53614Re-query CCDS DB by CCDS ID:18116.1Re-query CCDS DB by GeneID:53614See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18116.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030198.6 ENSMUSP00000030198.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030198.6Link to Ensembl Protein Viewer:ENSMUSP00000030198.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030198Re-query CCDS DB by Protein ID:ENSMUSP00000030198
Original member NCBI NM_016678.2 NP_057887.2 Updated not alive Link to Nucleotide Sequence:NM_016678.2Link to Protein Sequence:NP_057887.2Re-query CCDS DB by Nucleotide ID:NM_016678Re-query CCDS DB by Protein ID:NP_057887
Current member NCBI NM_016678.3 NP_057887.2 Accepted alive Link to Nucleotide Sequence:NM_016678.3Link to Protein Sequence:NP_057887.2Re-query CCDS DB by Nucleotide ID:NM_016678Re-query CCDS DB by Protein ID:NP_057887Link to BLAST:NP_057887.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057887.2 971 Q9Z0J1 971 100% 0 0

Chromosomal Locations for CCDS 18116.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43875606 43875705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43890964 43891022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43894819 43894893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43895850 43895886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43897995 43898080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43900070 43900117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43909580 43909613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43911932 43912129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43913785 43914052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43918314 43918493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43922812 43923024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43925061 43925197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43927146 43927286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43928277 43928465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43930193 43930315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43930889 43931060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43937310 43937502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43938889 43939099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43940657 43940730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43942274 43942429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43943144 43943365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2916 nt):
ATGGCGAGCGTCCGGGCCTCCCCGCGCAGCGCGCTGCTACTTCTGCTGGCCGCGGCGGGGGTCGCGGAGG
TGACGGGGGGCCTGGCCCCGGGCAGCGCGGGTGCTGTATGCTGTAATCATTCAAAAGATAACCAAATGTG
CCGTGATGTATGTGAGCAGATTTTCTCCTCAAAAAGTGAATCCCGACTGAAACATCTGTTGCAGAGAGCC
CCAGATTATTGCCCTGAAACAATGGTTGAAATTTGGAGTTGCATGAATTCGTCTTTGCCAGGGGTATTTA
AGAAGTCCGATGGTTGGGTTGGCTTAGGCTGCTGTGAACTGGCTATTGGCTTGGAGTGCCGACAGGCATG
CAAGCAGGCATCTTCGAAAAATGATATTTCCAAAGTTTGCAGGAAAGAATATGAGAATGCTCTTTTCAGT
TGCATTAGCAGAAATGAAATGGGCTCGGTGTGCTGCAGTTACGCAGGCCATCACACCAACTGCCGAGAAT
TCTGTCAAGCCATTTTTCGAACAGACTCTTCTCCTGGGCCATCTCAGATCAAAGCAGTGGAAAATTATTG
TGCCTCTATCAGTCCACAGTTGATACACTGTGTGAATAATTACACCCAGTCTTATCCAATGAGAAACCCA
ACTGATAGTTTATATTGCTGTGACAGAGCTGAAGACCATGCTTGCCAAAACGCCTGCAAGAGAATTCTAA
TGTCTAAGAAAACAGAAATGGAGATTGTTGATGGTCTCATTGAGGGTTGTAAGACCCAGCCCTTGCCTCA
AGATCCTCTTTGGCAGTGTTTTCTCGAAAGCTCACAGTCGGTTCACCCTGGAGTCACTGTGCACCCTCCT
CCCTCAACTGGCCTCGACGGGGCCAAATTGCACTGTTGCTCTAAAGCAAACACTTCAACCTGTAGGGAAC
TGTGCACCAAACTTTATAGCATGAGCTGGGGAAATACACAGAGTTGGCAAGAGTTTGACCGCATCTGTGA
GTATAATCCGGTGGAAGTGTCCATGCTGACGTGTCTGGCTGATGTCCGGGAGCCTTGCCAGTTGGGCTGT
ACAAACCTGACTTACTGTACAAACTTTAACAACAGGCCAACAGAACTGTTCAGGAGCTGCACGGCTCAGT
CTGACCAGGGGGCCATGAGTGACATGAAGCTGTGGGAGAAGGGGAGCATCAAGATGCCCTTCATCAGCAT
CCCTGTCCTAGACATCAAGACCTGCCAGCCAGAGATGTGGAAGGCCGTGGCCTGCTCCCTGCAGATCAAG
CCGTGCCATAGCAAATCCCGAGGCAGTATTATCTGCAAATCAGATTGTGTAGAGATTCTCAAGAAATGTG
GAGACCAGAATAAATTCCCTGAAGAACACACAGCTGAAAGTATCTGTGAGTTTCTGTCCCCTGCAGATGA
CCTGGAGAGCTGTATCCCTCTGGACACGTACCTCAGGCCAAGTGCTTTAGGAAACATCATAGAAGAAGTG
ACTCACCCCTGTAACCCAAACCCCTGCCCAGCCAACGAGCTCTGTGAAGTGAACCGGAAGGGGTGTCCGT
CTGCAGATCCCTGCCTTCCATACTCCTGTGTTCAAGGCTGCAAATTGGGAGAAGCTTCTGACTTCATCGT
CCGCCAGGGGACACTGATCCAGGTGCCGTCCTCTGCAGGGGAAGTTGGTTGCTACAAGATCTGTTCCTGT
GGACAAAGTGGCCTCTTGGAAAACTGTATGGAAATGCACTGTATCGACCTCCAGAAGTCTTGTATTGTCG
GAGGAAAAAGAAAAAGCCACGGAACATCCTTTACTATTGACTGCAATGTCTGTTCTTGTTTTGCGGGTAA
TTTAGTGTGTTCCACCCGCCTGTGCCTCAGTGAGCACAGTTCAGACGACGACCGCCGCACCTTCACAGGT
CTGCCCTGTAACTGCGCAGATCAGTTTGTCCCAGTGTGTGCACAGAATGGACGCACTTACCCCAGTGCCT
GCATCGCTCGCTGTGTGGGTCTCCAGGACCATCAGTTTGAGTTTGGACCTTGTATCTCCAAGAATCCCTG
TAATCCTAACCTCTGCCCCAAAAGCCAAAGATGTGTGCCAAAACCACAAGTCTGCCTGACGACTTTTGAT
AAATTTGGATGTAGCCAATATGAGTGTGTGCCCAGACAGCTCACCTGTGACCAGGCCCGAGATCCTGTGT
GTGACACAGATCACATGGAGCACAGCAACCTCTGCACTCTGTACCAAAGAGGGAAAAGCCTGTCTTACAG
AGGCCCTTGCCAGCCTTTCTGCAGAGCCAAGGAGCCTGTCTGTGGGCACAATGGTGAGACATACAGCAGT
GTGTGTGCTGCCTACTCAGATCGTGTGGCCGTGGATTACTACGGGCCCTGCCAGGCTGTCGGCGTCCTCT
CGGAATACAGTGCTGTGGCTGAGTGTGCTGCTGTCAAGTGTCCTTCCCTCTCAGCCATAGGCTGCAAACC
CATCATCCCACCAGGGGCTTGCTGTCCACTATGTGCTGGGATGTTACGGGTATTATTTGACAAAGAAAAA
CTGGACACTATTGCTAAGGTGACAAGCAAGAAGCCCATAACCGTTGTGGAGATTCTTCAGAAGGTCCGCA
TGCACGTGTCTGTGCCGCAGTGTGACGTGTTTGGATACTTGAGCATCGAGTCGGAAATTGTGATCCTCAT
TATTCCTGTGGACCATTACCCAAAAGCTTTGCAGATTGAGGCCTGCAATAAGGAGGCAGAGAAAATCGAG
TCCCTCATCAACTCCGACAGCCCCACGCTGGCGTCCCACGTCCCACTCTCGGCCCTCATCATTTCCCAAG
TGCAGGTCTCCAGCAGTCTCCCGTCATCTGCTGTTGTGGGCAGGCCTCTCTTCCACTCCCTGCTCCTCCT
CCTCAGCCTGGGCCTCACCGTGCACTTGCTCTGGACTAGACCCTGA

Translation (971 aa):
MASVRASPRSALLLLLAAAGVAEVTGGLAPGSAGAVCCNHSKDNQMCRDVCEQIFSSKSESRLKHLLQRA
PDYCPETMVEIWSCMNSSLPGVFKKSDGWVGLGCCELAIGLECRQACKQASSKNDISKVCRKEYENALFS
CISRNEMGSVCCSYAGHHTNCREFCQAIFRTDSSPGPSQIKAVENYCASISPQLIHCVNNYTQSYPMRNP
TDSLYCCDRAEDHACQNACKRILMSKKTEMEIVDGLIEGCKTQPLPQDPLWQCFLESSQSVHPGVTVHPP
PSTGLDGAKLHCCSKANTSTCRELCTKLYSMSWGNTQSWQEFDRICEYNPVEVSMLTCLADVREPCQLGC
TNLTYCTNFNNRPTELFRSCTAQSDQGAMSDMKLWEKGSIKMPFISIPVLDIKTCQPEMWKAVACSLQIK
PCHSKSRGSIICKSDCVEILKKCGDQNKFPEEHTAESICEFLSPADDLESCIPLDTYLRPSALGNIIEEV
THPCNPNPCPANELCEVNRKGCPSADPCLPYSCVQGCKLGEASDFIVRQGTLIQVPSSAGEVGCYKICSC
GQSGLLENCMEMHCIDLQKSCIVGGKRKSHGTSFTIDCNVCSCFAGNLVCSTRLCLSEHSSDDDRRTFTG
LPCNCADQFVPVCAQNGRTYPSACIARCVGLQDHQFEFGPCISKNPCNPNLCPKSQRCVPKPQVCLTTFD
KFGCSQYECVPRQLTCDQARDPVCDTDHMEHSNLCTLYQRGKSLSYRGPCQPFCRAKEPVCGHNGETYSS
VCAAYSDRVAVDYYGPCQAVGVLSEYSAVAECAAVKCPSLSAIGCKPIIPPGACCPLCAGMLRVLFDKEK
LDTIAKVTSKKPITVVEILQKVRMHVSVPQCDVFGYLSIESEIVILIIPVDHYPKALQIEACNKEAEKIE
SLINSDSPTLASHVPLSALIISQVQVSSSLPSSAVVGRPLFHSLLLLLSLGLTVHLLWTRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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