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Report for CCDS24131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24131.1 Public Mus musculus 10 Nr2c1 23 108 98 CCDS HistoryNCBI Gene:22025Re-query CCDS DB by CCDS ID:24131.1Re-query CCDS DB by GeneID:22025See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24131.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092213.10 ENSMUSP00000089858.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092213.10Link to Ensembl Protein Viewer:ENSMUSP00000089858.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000092213Re-query CCDS DB by Protein ID:ENSMUSP00000089858
Original member Current member EBI ENSMUST00000099343.1 ENSMUSP00000096945.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099343.1Link to Ensembl Protein Viewer:ENSMUSP00000096945.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099343Re-query CCDS DB by Protein ID:ENSMUSP00000096945
Original member Current member EBI ENSMUST00000105290.8 ENSMUSP00000100927.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105290.8Link to Ensembl Protein Viewer:ENSMUSP00000100927.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105290Re-query CCDS DB by Protein ID:ENSMUSP00000100927
Original member Current member NCBI NM_011629.3 NP_035759.3 Accepted alive Link to Nucleotide Sequence:NM_011629.3Link to Protein Sequence:NP_035759.3Re-query CCDS DB by Nucleotide ID:NM_011629Re-query CCDS DB by Protein ID:NP_035759Link to BLAST:NP_035759.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035759.3 590 Q505F1-1 590 100% 0 0

Chromosomal Locations for CCDS 24131.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 94156926 94156979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94162250 94162444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94163729 94163807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94165418 94165597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94167410 94167557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94167638 94167728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94171049 94171233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94171978 94172137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94181494 94181615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94188149 94188288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94190619 94190756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94192835 94192940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94195177 94195351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGGCGACCATAGAAGAAATTGCACATCAAATTATCGACCAACAGATGGGTGAGATTGTTACAGAGCAGC
AGACTGGACAGAAAATCCAGATCGTGACAGCACTTGACCACAGCACACAGGGCAAGCAGTTCATTCTGGC
AAACCACGAGGGATCCACGCCAGGGAAAGTCTTCCTCACAACTCCAGACGCCGCAGGTGTCAACCAGTTG
TTTTTTACCAGTCCTGATCTGTCCGCACCGCACCTCCAGCTCTTAACAGAAAAGTCTCCTGACCAGGGAC
CAAATAAGGTTTTTGATCTTTGTGTCGTGTGTGGAGACAAAGCATCAGGGCGTCATTACGGAGCAATAAC
TTGTGAAGGCTGCAAAGGATTCTTTAAAAGAAGCATCCGGAAAAACCTAGTCTATTCCTGTCGAGGATCC
AAAGACTGCGTTATCAATAAGCACCACCGAAACCGCTGCCAGTACTGCAGGCTGCAGAGGTGCATTGCCT
TCGGGATGAAGCAAGACTCTGTTCAGTGTGAAAGAAAACCCATTGAAGTTTCCCGAGAAAAATCTTCCAA
CTGTGCAGCTTCAACAGAAAAAATCTACATCCGCAAAGACCTCCGAAGCCCTCTAGCCGCAACGCCAACC
TTTGTAACAGACAGCGAGACTGCCAGGTCAGCTGGACTGTTGGATTCAGGAATGTTTGTGAATATTCATC
CGTCTGGAATAAAAACAGAGCCAGCTATGCTAATGGCACCAGATAAGGCTGAATCGTGTCAGGGAGACTT
AAGCACATTGGCCAGTGTGGTCACATCATTAGCGAATCTCGGCAAAGCTAAAGACCTTTCTCACTGCGGT
GGGGATATGCCTGTGGTGCAGAGCTTACGCAATGGGGATACATCCTTCGGTGCTTTTCATCATGATATTC
AGACCAATGGGGATGTTTCAAGGGCATTTGACACTCTTGCAAAAGCACTGACTCCCGGCGAAAGCTCCGC
CTGCCAGAGCCCAGAAGAGGGCATGGAGGGAAGCCCGCATCTAATCGCTGGAGAGCCAAGCTTCGTGGAG
AAGGAGGGGCCGCTGCTGAGCGAGTCGCACGTAGCTTTCAGGCTCACCATGCCTTCTCCTATGCCCGAGT
ACCTGAATGTGCACTACATTGGGGAGTCGGCCTCCAGACTGCTGTTCTTATCGATGCACTGGGCACTTTC
CATACCTTCTTTCCAGGCGCTAGGGCAGGAGAACAGCATATCACTGGTAAAAGCGTATTGGAATGAGCTT
TTTACCCTTGGTCTTGCCCAGTGCTGGCAAGTGATGAACGTGGCAACTATATTAGCAACGTTTGTCAACT
GTCTTCACAGTAGCCTTCAGCAAGATAAAATGTCCCCGGAAAGGAGGAAGTCGTTGATGGAGCACATCTT
CAAGCTACAGGAGTTCTGCAACAGCATGGTTAAGCTCTGCATCGATGGGCATGAGTACGCCTACCTCAAG
GCCATCGTCCTCTTCAGTCCCGATCACCCAGGCCTGGAGAACATGGAGCTAATTGAGAGATTTCAGGAAA
AGGCTTATGTGGAATTCCAAGATTATATCACCAGGACATATCCAGATGACACCTACAGGCTGTCGCGATT
ACTTCTCAGACTGCCCGCCTTGCGGCTGATGAACGCTACCATTACTGAGGAGTTGTTCTTCAAAGGTCTC
ATTGGCAACGTACGGATCGACAGTGTTATCCCACACATTTTAAAAATGGAGCCTGCAGATTACAACTCTC
AAATAATTGGTCACAGCCTTTGA

Translation (590 aa):
MATIEEIAHQIIDQQMGEIVTEQQTGQKIQIVTALDHSTQGKQFILANHEGSTPGKVFLTTPDAAGVNQL
FFTSPDLSAPHLQLLTEKSPDQGPNKVFDLCVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGS
KDCVINKHHRNRCQYCRLQRCIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLAATPT
FVTDSETARSAGLLDSGMFVNIHPSGIKTEPAMLMAPDKAESCQGDLSTLASVVTSLANLGKAKDLSHCG
GDMPVVQSLRNGDTSFGAFHHDIQTNGDVSRAFDTLAKALTPGESSACQSPEEGMEGSPHLIAGEPSFVE
KEGPLLSESHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNEL
FTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDGHEYAYLK
AIVLFSPDHPGLENMELIERFQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGL
IGNVRIDSVIPHILKMEPADYNSQIIGHSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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