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Report for CCDS37173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37173.1 Public Mus musculus 15 Mlc1 23 108 98 CCDS HistoryNCBI Gene:170790Re-query CCDS DB by CCDS ID:37173.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042594.12 ENSMUSP00000047667.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042594.12Link to Ensembl Protein Viewer:ENSMUSP00000047667.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042594Re-query CCDS DB by Protein ID:ENSMUSP00000047667
Original member Current member NCBI NM_133241.2 NP_573504.1 Accepted alive Link to Nucleotide Sequence:NM_133241.2Link to Protein Sequence:NP_573504.1Re-query CCDS DB by Nucleotide ID:NM_133241Re-query CCDS DB by Protein ID:NP_573504Link to BLAST:NP_573504.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573504.1 382 Q8VHK5 382 100% 0 0

Chromosomal Locations for CCDS 37173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 88957022 88957096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88958064 88958225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88963414 88963536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88964148 88964204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88965379 88965495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88965939 88966010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88966393 88966494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88974485 88974586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88974724 88974777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88976503 88976592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88977799 88977993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGACACGGGAGGGGCAGTTCAGGGAGGAACTGGGCTATGACCGGATGCCCACACTGGAGAGGGGTCGGC
AGGATGCAGGACGGCAGGACCCAGGCAGCTACACCCCTGACTCAAAGCCCAAGGACCTGCAGCTGTCGAA
GAGGTTGCCCCCGTGCTTCAGCTACAAGACATGGGTGTTCTCTGTGTTAATGGGGAGCTGCCTTCTTGTG
ACCTCTGGGTTTTCGCTCTACTTGGGGAACGTGTTCCCCTCCGAGATGGATTATTTGCGCTGTGCAGCAG
GCTCTTGCATCCCCTCAGCAATTGTGAGCTTCGCTGTAGGGAGGAGAAATGTCAGTGCGATTCCCAACTT
TCAGATATTGTTTGTTTCCACGTTCGCTGTGACTACTACGTGTTTGATCTGGTTTGGGTGTAAACTGATC
CTGAATCCTTCAGCCATAAACATTAATTTCAACCTCATCCTGCTCCTGCTGTTGGAGCTCCTCATGGCAG
CCACGGTGATCATTTCGGCCCGGTCCAGTGAGGAGCCCTGCAAGAAGAAGAAGGGTTCCATCTCCGATGG
CTCTAACATTCTGGATGAAGTGACGTTTCCTGCTCGGGTCCTAAAGTCCTACTCTGTGGTAGAAGTAATT
GCTGGTGTCTCCGCTGTCCTCGGTGGGGTGATCGCTCTAAACGTAGAGGAAGCTGTCTCGGGTCCACATC
TCTCGGTGACGTTCTTTTGGATTTTAGTGGCTTGTTTTCCCAGTGCCATTGCCAGCCATGTGACAGCGGA
ATGTCCCAGCAAGTGTCTGGTTGAGGTGCTGATAGCCATCAGCAGCCTCACATCCCCACTGCTATTCACT
GCCTCTGGATATCTGTCCTTCAGTGTGATGAGAGTCGTGGAGATTTTTAAAGATTACCCGCCAGCCATCA
AATCTTATGATGTTCTCCTGCTGCTCCTGTTGCTGCTGCTGCTGCTTCAGGGGGGACTCAACACTGGCAC
CGCCATCCAGTGTGTGAGCTTCAAAGTCAGCGCCCGGCTGCAGGCTGCATCCTGGGACCCCCAGTCCTGT
CCCCAGGAGCGGCCAGCAGGGGAGGTGGTCCGAGGCCCCCTCAAGGAGTTTGACAAAGAGAAAGCCTGGA
GAGCTGTGGTGGTACAAATGGCCCAGTGA

Translation (382 aa):
MTREGQFREELGYDRMPTLERGRQDAGRQDPGSYTPDSKPKDLQLSKRLPPCFSYKTWVFSVLMGSCLLV
TSGFSLYLGNVFPSEMDYLRCAAGSCIPSAIVSFAVGRRNVSAIPNFQILFVSTFAVTTTCLIWFGCKLI
LNPSAININFNLILLLLLELLMAATVIISARSSEEPCKKKKGSISDGSNILDEVTFPARVLKSYSVVEVI
AGVSAVLGGVIALNVEEAVSGPHLSVTFFWILVACFPSAIASHVTAECPSKCLVEVLIAISSLTSPLLFT
ASGYLSFSVMRVVEIFKDYPPAIKSYDVLLLLLLLLLLLQGGLNTGTAIQCVSFKVSARLQAASWDPQSC
PQERPAGEVVRGPLKEFDKEKAWRAVVVQMAQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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