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Report for CCDS30406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30406.1 Public Mus musculus X Nxf7 23 108 98 CCDS HistoryNCBI Gene:170722Re-query CCDS DB by CCDS ID:30406.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033784.12 ENSMUSP00000033784.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033784.12Link to Ensembl Protein Viewer:ENSMUSP00000033784.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033784Re-query CCDS DB by Protein ID:ENSMUSP00000033784
Original member Current member EBI ENSMUST00000113163.7 ENSMUSP00000108788.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113163.7Link to Ensembl Protein Viewer:ENSMUSP00000108788.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113163Re-query CCDS DB by Protein ID:ENSMUSP00000108788
Original member Current member NCBI NM_130888.2 NP_570958.1 Accepted alive Link to Nucleotide Sequence:NM_130888.2Link to Protein Sequence:NP_570958.1Re-query CCDS DB by Nucleotide ID:NM_130888Re-query CCDS DB by Protein ID:NP_570958Link to BLAST:NP_570958.1

Chromosomal Locations for CCDS 30406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135579787 135579825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135579955 135580015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135583084 135583266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135583723 135583789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135584353 135584395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135584487 135584602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135584704 135584762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135584897 135585004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135585141 135585196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135585281 135585349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135585766 135585802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135587237 135587346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135587518 135587625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135587733 135587821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135587967 135588036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135588182 135588262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135588373 135588477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135588576 135588659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135588931 135589081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135589317 135589470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135592266 135592295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135593813 135593855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGTGCTCTAATGAAAGGAAGCAGGGGTCCTTCAGATACACAGGAACAACTAATGCCTGGCAAAGCCCCA
TGGGAAGAAAGAAAGACAGGGTTTCTTCCCTGAGCTATGCTGGCAAGAGGACCGATCATTATGAGCATAC
TGGGCACACGATTCTGCCTTTCAAAGCCCAGAGTGATGGTGGAAATCTGGAGATGAGAGCTGTTCTCTGG
AACCCGTCAGTAAGACACACACCTTATGTTGGGCAACATAGGAGTAGGGAGGAAGAGCATATGGAAGACC
AAATCCATGTCACGGCGCAGAGAGATGACAAACCTGAACAGAGAGAAGCAGGGCAGTTCACAGAAGACGG
AGAACTGGGGAGCTGGTTCAAGGTCACGGTTCCATGTGGGAGGAAGTATGACAAGACACAGCTAATGAAT
TCAATCCACAGCCTTTGCAGCGTGCCCTTCACACCTGTGGATTTCCATTGTGACAAACACCGGATCCAGT
TCTTTGTCCCAGACTTTCGCATTGCCTCTGCATTGAAGGATATCAGCTATAAGATACATAATGAGTACTT
TCAGAAGATTCCTATTTTTGTCAATCCCTCGGTTGCACCCTACTCTGTGCAGAATAGATTCACAAAAGAA
GAAATGGAACAGCTGAAGCTGGCCATGAGGAAAAGATATGATGTTTCCCAGCATGCTCTCTGCCTCAAAA
AGCTCCGCTTTGATCCAGACTTGATGAAAAACAACATCCACATGATCCTAAATCACAGAAGCTGCATGGC
TGCCACCCTTCAGATCATCCAAGAGAATTTTCCTAAGCTGTTATCCTTGAACTTGAGCAGCAACAAACTG
TTCCAATTAGATAGCCTGATTGATGTGGTAAAGAAGGCACCGCAACTCAAGATCTTGAACCTCTCCAAAA
ACATGCTAAGAACAGTGTGGGAGTTGGAGAAGATGAAAGGGCTGAAGCTGGAGCAGCTGTGGCTAGAAGG
GAACCCATTGTGCAGCACCTTCCCAGACCGATCTTCCTATATAAGAGCAGTCCTGGAATGTTTTCCGGAG
TTGTCATACCTGGATGGCAGGAAGTTATTACTTCCAACTGTAATGAACACTCAAGAACGCAAGTTAATGA
AGCCCTGCAAGGACATCTTTATGGGTTCAGAGGTGATAAAGAATCAAGTACACAGATTCCTGCGAGAGTA
TTACTTGATGTACGACTCTGAAGAGCGACAGGGTCTCCTGAACATTTACCATGACCAGGCCTGCTTCTCC
CTGACCATTCCCTTCAACCCCAATGATCCAGATCTGAATAGCATGTATGTCTACTTCAAGGATGAAAATG
ATATGAAGAATTTCAAGGAGTTCCACATTCAGAGGCAGCTACTGAAGTACACAAAACAAGATATTGTGGA
GTGTCTGAGGGGATTTCCCCAAACTCTACATGCCTTCAGCTCTTTCCAAGTGAACATCTGTTTTCAGATG
GAAACGATGCTCTGCTTCTCTGTTTGTGGGTTGTTCAAGGAAGAGGGCACCCCCAAGGAATGTGTTCGTG
CCTTTATGAGGATCTTCATTGCTCTCCTTGGCAGTTCAAACATGTATATTGTGAATGACCAGCTTTTTGT
GAGGAATCCAAGCTCTGAAGAGATCAATAGTGCCTTTGTCATACCCTCGCCCACATCATACTCCAACTTC
AAGCTTGTCCTTTCTCAAGAGCAGCAAAGAATGGTGCAGGCTTTCTCCACCCAGTCGGGGATGAAACTTG
AATGGTCTCAGAAGTGCCTTGAAGATAACAAGTGGGACTATGCCAGAGCTGCTGAAGTCTTCACTATGCT
TCAGACCAAGTGCAAGATCCCAAAGGAATTCTTCAAACAATGA

Translation (620 aa):
MCSNERKQGSFRYTGTTNAWQSPMGRKKDRVSSLSYAGKRTDHYEHTGHTILPFKAQSDGGNLEMRAVLW
NPSVRHTPYVGQHRSREEEHMEDQIHVTAQRDDKPEQREAGQFTEDGELGSWFKVTVPCGRKYDKTQLMN
SIHSLCSVPFTPVDFHCDKHRIQFFVPDFRIASALKDISYKIHNEYFQKIPIFVNPSVAPYSVQNRFTKE
EMEQLKLAMRKRYDVSQHALCLKKLRFDPDLMKNNIHMILNHRSCMAATLQIIQENFPKLLSLNLSSNKL
FQLDSLIDVVKKAPQLKILNLSKNMLRTVWELEKMKGLKLEQLWLEGNPLCSTFPDRSSYIRAVLECFPE
LSYLDGRKLLLPTVMNTQERKLMKPCKDIFMGSEVIKNQVHRFLREYYLMYDSEERQGLLNIYHDQACFS
LTIPFNPNDPDLNSMYVYFKDENDMKNFKEFHIQRQLLKYTKQDIVECLRGFPQTLHAFSSFQVNICFQM
ETMLCFSVCGLFKEEGTPKECVRAFMRIFIALLGSSNMYIVNDQLFVRNPSSEEINSAFVIPSPTSYSNF
KLVLSQEQQRMVQAFSTQSGMKLEWSQKCLEDNKWDYARAAEVFTMLQTKCKIPKEFFKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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