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Report for CCDS54886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54886.1 Public Homo sapiens 5 FBXL17 24 110 108 CCDS HistoryNCBI Gene:64839Re-query CCDS DB by CCDS ID:54886.1Re-query CCDS DB by GeneID:64839See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542267.7 ENSP00000437464.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000542267.7Link to Ensembl Protein Viewer:ENSP00000437464.2Re-query CCDS DB by Nucleotide ID:ENST00000542267Re-query CCDS DB by Protein ID:ENSP00000437464
Original member Current member NCBI NM_001163315.3 NP_001156787.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001163315.3Link to Protein Sequence:NP_001156787.2Re-query CCDS DB by Nucleotide ID:NM_001163315Re-query CCDS DB by Protein ID:NP_001156787Link to BLAST:NP_001156787.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156787.2 701 Q9UF56-1 701 100% 0 0

Chromosomal Locations for CCDS 54886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 107861720 107861860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107881037 107881179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108020925 108021001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108186117 108186247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108224121 108224228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108348399 108348530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108364738 108364995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108367831 108367953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108380699 108381691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGGCCACCTTCTCTCGAAGGAGCCGCGTAACCGCCCGAGCCAGAAGAGGCCTCGCTGTTGCAGTTGGT
GCCGCCGCCGGCGCCCTCTCCTCAGGCTGCCCCGCCGGACCCCAGCCAAGGTGCCCCCTCAGCCGGCGGC
GCCCCGGAGCCGGGACTGCTTCTTCCGCGGGCCCTGCATGCTCTGCTTCATCGTGCACAGTCCCGGCGCG
CCCGCCCCCGCCGGCCCAGAGGAGGAGCCGCCGCTCTCGCCGCCGCCGCGGGACGGGGCCTACGCTGCCG
CCTCCTCCTCTCAGCACCTGGCGCGGCGCTACGCGGCCCTGGCCGCCGAGGACTGCGCCGCTGCTGCCCG
CCGCTTCCTGCTATCCTCGGCCGCCGCCGCCGCCGCCGCTGCCGCCTCGGCTTCGTCGCCCGCCTCCTGC
TGCAAAGAGTTGGGGCTGGCTGCGGCCGCCGCCTGGGAGCAGCAGGGCCGAAGTCTCTTCCTGGCCAGCT
TGGGGCCGGTGCGCTTCCTGGGGCCGCCCGCCGCCGTGCAGCTCTTCCGGGGGCCGACACCGTCACCGGC
CGAGCTCCCTACGCCCCCCGAAATGGTGTGCAAGCGGAAGGGGGCCGGGGTCCCCGCCTGCACCCCCTGC
AAGCAGCCCCGCTGCGGCGGCGGGGGCTGCGGCGGCGGCGGCGGCGGCGGTGGCGGGGGAGGGCCTGCGG
GGGGAGGCGCTTCGCCGCCCCGGCCCCCCGACGCCGGCTGCTGCCAGGCCCCGGAGCAGCCCCCGCAGCC
GCTCTGCCCTCCGCCCTCTTCTCCCACCTCCGAAGGTGCCCCCACCGAAGCTGGCGGGGACGCTGTCCGA
GCCGGGGGCACCGCCCCCTTGTCCGCCCAGCAGCAGCATGAATGTGGCGACGCGGACTGTCGGGAGTCCC
CCGAAAACCCCTGCGACTGTCACAGGGAGCCGCCCCCCGAAACCCCAGACATCAACCAGCTGCCGCCGTC
CATCCTGCTCAAGATATTTTCCAATTTGTCACTGGATGAGCGTTGCCTTTCCGCATCATTGGTTTGCAAG
TACTGGCGTGACCTTTGTTTAGACTTCCAGTTTTGGAAGCAGCTGGATCTTAGTAGTCGTCAGCAGGTCA
CTGATGAATTGTTGGAAAAAATTGCATCAAGAAGTCAGAATATAATTGAAATCAACATTTCTGATTGTCG
CAGTATGTCTGATAATGGCGTATGTGTTTTAGCATTTAAATGTCCTGGACTTCTTAGGTATACAGCCTAC
AGGTGTAAACAGCTTTCTGACACCTCTATTATTGCGGTTGCCTCTCACTGTCCTTTACTTCAGAAAGTGC
ATGTAGGCAACCAGGACAAACTCACTGATGAAGGACTCAAGCAGCTGGGCTCAAAATGCAGAGAACTCAA
AGATATTCATTTCGGCCAGTGTTACAAGATCTCAGATGAAGGCATGATCGTCATAGCTAAGGGCTGTCTG
AAATTACAAAGGATATACATGCAGGAAAACAAATTAGTGACAGATCAGTCAGTGAAAGCATTTGCTGAAC
ACTGTCCTGAGCTTCAATATGTAGGCTTCATGGGTTGTTCAGTCACTTCTAAAGGAGTCATTCACCTAAC
CAAGCTAAGAAACCTTTCCAGCTTGGACCTACGTCATATCACTGAACTGGATAATGAAACCGTGATGGAA
ATTGTCAAGAGGTGCAAAAATCTTAGCTCTCTCAATCTCTGTCTGAACTGGATCATAAATGACAGGTGTG
TGGAGGTCATTGCAAAGGAAGGACAAAACCTGAAAGAGCTATATTTGGTGTCCTGTAAAATCACAGATTA
TGCACTGATAGCCATTGGGCGATACAGCATGACAATAGAGACTGTGGATGTCGGATGGTGTAAAGAAATC
ACAGACCAAGGAGCCACCCTGATTGCACAGAGCAGCAAGTCTCTGAGATATTTGGGGCTGATGAGATGTG
ATAAAGTCAACGAAGTGACGGTGGAACAGCTGGTGCAGCAGTACCCCCACATCACCTTCAGCACCGTCCT
GCAGGACTGCAAGAGGACCTTGGAGAGAGCCTATCAGATGGGCTGGACCCCCAACATGTCTGCCGCCTCC
TCCTAG

Translation (701 aa):
MGHLLSKEPRNRPSQKRPRCCSWCRRRRPLLRLPRRTPAKVPPQPAAPRSRDCFFRGPCMLCFIVHSPGA
PAPAGPEEEPPLSPPPRDGAYAAASSSQHLARRYAALAAEDCAAAARRFLLSSAAAAAAAAASASSPASC
CKELGLAAAAAWEQQGRSLFLASLGPVRFLGPPAAVQLFRGPTPSPAELPTPPEMVCKRKGAGVPACTPC
KQPRCGGGGCGGGGGGGGGGGPAGGGASPPRPPDAGCCQAPEQPPQPLCPPPSSPTSEGAPTEAGGDAVR
AGGTAPLSAQQQHECGDADCRESPENPCDCHREPPPETPDINQLPPSILLKIFSNLSLDERCLSASLVCK
YWRDLCLDFQFWKQLDLSSRQQVTDELLEKIASRSQNIIEINISDCRSMSDNGVCVLAFKCPGLLRYTAY
RCKQLSDTSIIAVASHCPLLQKVHVGNQDKLTDEGLKQLGSKCRELKDIHFGQCYKISDEGMIVIAKGCL
KLQRIYMQENKLVTDQSVKAFAEHCPELQYVGFMGCSVTSKGVIHLTKLRNLSSLDLRHITELDNETVME
IVKRCKNLSSLNLCLNWIINDRCVEVIAKEGQNLKELYLVSCKITDYALIAIGRYSMTIETVDVGWCKEI
TDQGATLIAQSSKSLRYLGLMRCDKVNEVTVEQLVQQYPHITFSTVLQDCKRTLERAYQMGWTPNMSAAS
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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