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Report for CCDS17836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17836.1 Public Mus musculus 3 Pla2g12a 23 108 98 CCDS HistoryNCBI Gene:66350Re-query CCDS DB by CCDS ID:17836.1Re-query CCDS DB by GeneID:66350See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029629.14 ENSMUSP00000029629.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029629.14Link to Ensembl Protein Viewer:ENSMUSP00000029629.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029629Re-query CCDS DB by Protein ID:ENSMUSP00000029629
Original member Current member NCBI NM_023196.4 NP_075685.2 Accepted alive Link to Nucleotide Sequence:NM_023196.4Link to Protein Sequence:NP_075685.2Re-query CCDS DB by Nucleotide ID:NM_023196Re-query CCDS DB by Protein ID:NP_075685Link to BLAST:NP_075685.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075685.2 192 Q9EPR2-1 192 100% 0 0

Chromosomal Locations for CCDS 17836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129878719 129878935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129888881 129888957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129890268 129890433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129894838 129894956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGTGACTCCGCGGCCCGCGCCCGCCCGGAGCCCCGCGCTCCTCCTCCTCCTGCTGCTGGCCACTGCGC
GTGGGCAGGAACAGGACCAGACCACCGACTGGAGGGCCACCCTCAAGACCATCCGCAACGGCATCCACAA
GATAGACACGTACCTCAACGCCGCGCTGGACCTGCTGGGCGGGGAGGACGGGCTCTGCCAGTACAAGTGC
AGCGACGGATCGAAGCCTGTTCCACGCTATGGATATAAACCATCTCCACCAAATGGCTGTGGCTCGCCAC
TGTTTGGCGTTCATCTGAACATAGGTATCCCTTCCCTGACCAAGTGCTGCAACCAGCACGACAGATGCTA
CGAGACCTGCGGGAAAAGCAAGAACGACTGTGACGAGGAGTTCCAGTACTGCCTCTCCAAGATCTGCAGA
GACGTGCAGAAGACGCTCGGACTATCTCAGAACGTCCAGGCATGTGAGACAACGGTGGAGCTCCTCTTTG
ACAGCGTCATCCATTTAGGCTGCAAGCCATACCTGGACAGCCAGCGGGCTGCATGCTGGTGTCGTTATGA
AGAAAAAACAGATCTATAA

Translation (192 aa):
MVTPRPAPARSPALLLLLLLATARGQEQDQTTDWRATLKTIRNGIHKIDTYLNAALDLLGGEDGLCQYKC
SDGSKPVPRYGYKPSPPNGCGSPLFGVHLNIGIPSLTKCCNQHDRCYETCGKSKNDCDEEFQYCLSKICR
DVQKTLGLSQNVQACETTVELLFDSVIHLGCKPYLDSQRAACWCRYEEKTDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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