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Report for CCDS17926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17926.1 Public Mus musculus 3 Lhx8 23 108 98 CCDS HistoryNCBI Gene:16875Re-query CCDS DB by CCDS ID:17926.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17926.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177846.7 ENSMUSP00000136047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177846.7Link to Ensembl Protein Viewer:ENSMUSP00000136047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177846Re-query CCDS DB by Protein ID:ENSMUSP00000136047
Original member NCBI NM_010713.2 NP_034843.2 Updated not alive Link to Nucleotide Sequence:NM_010713.2Link to Protein Sequence:NP_034843.2Re-query CCDS DB by Nucleotide ID:NM_010713Re-query CCDS DB by Protein ID:NP_034843
Current member NCBI NM_010713.3 NP_034843.2 Accepted alive Link to Nucleotide Sequence:NM_010713.3Link to Protein Sequence:NP_034843.2Re-query CCDS DB by Nucleotide ID:NM_010713Re-query CCDS DB by Protein ID:NP_034843Link to BLAST:NP_034843.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034843.2 367 O35652 367 100% 0 0

Chromosomal Locations for CCDS 17926.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 154306959 154307005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154311540 154311723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154316743 154316838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154321627 154321730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154322241 154322461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154324542 154324663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154328005 154328166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154328355 154328441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154330272 154330352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGTATTGGAAGAGCGATCAGATGTTTGTGTGTAAGCTGGAGGGAAAGGAAGTGCCGGAGCTGGCGGTTC
CCCGCGAGAAGTGCCCCGGGCTCATGTCGGAGGAGTGCGGGCGGCCTGCAGCCCTGGCGGCCGGGAGGAC
CCGCAAAGGCGCTGGGGAAGAAGGACTGGTGAATCCCGAGGGAGCCGGGGACGAGGACTCCTGCTCCTCC
TCGGCCCCGCTTTCCCCGTCGTCCTCGCCCCAGTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAAGT
GTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGGACAAATACCTCCTCAAGGTGAATGACTTATGCTGGCA
TGTCCGCTGTCTCTCCTGCAGTGTCTGCAGAACGTCCCTGGGAAGGCACACGAGCTGCTACATTAAGGAT
AAAGACATTTTCTGTAAACTCGATTACTTCAGACGGTATGGGACCCGCTGTTCCCGCTGTGGCAGGCACA
TCCACTCGACTGACTGGGTCCGCAGGGCCAAGGGCAACGTGTATCACCTGGCCTGCTTTGCCTGCTTTTC
TTGCAAGAGGCAGCTGTCCACGGGAGAGGAGTTCGCCTTGGTGGAGGAGAAGGTCCTCTGTAGAGTGCAC
TTTGACTGCATGCTGGACAATCTGAAGAGAGAAGTGGAGAACGGTAATGGGATTAGTGTGGAAGGAGCCC
TTCTCACAGAGCAAGACGTCAATCATCCAAAGCCAGCCAAAAGAGCTCGGACCAGCTTCACAGCCGATCA
GCTCCAGGTTATGCAAGCACAGTTCGCTCAGGACAACAACCCAGATGCACAGACCCTCCAGAAACTGGCA
GAAAGGACAGGCTTAAGCAGACGTGTCATACAGGTGTGGTTTCAGAACTGCAGGGCCCGCCATAAGAAAC
ACGTCAGTCCCAACCATTCTTCCTCAGCCCCCGTCACAGCTGTCCCCTCCTCCAGGCTGTCCCCACCCAT
GTTGGAAGAAATGGCTTATTCTGCCTACGTACCCCAGGATGGGACGATGCTGACTGCGCTGCACTCATAC
ATGGATGCTCACCAACAACTCCTGGACTCCAGCCCTTGTTACCCCATCCAATGA

Translation (367 aa):
MYWKSDQMFVCKLEGKEVPELAVPREKCPGLMSEECGRPAALAAGRTRKGAGEEGLVNPEGAGDEDSCSS
SAPLSPSSSPQSMASGSVCPPGKCVCSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKD
KDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVH
FDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLA
ERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSAPVTAVPSSRLSPPMLEEMAYSAYVPQDGTMLTALHSY
MDAHQQLLDSSPCYPIQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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