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Report for CCDS25332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25332.1 Public Mus musculus 11 Lasp1 23 108 98 CCDS HistoryNCBI Gene:16796Re-query CCDS DB by CCDS ID:25332.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043843.11 ENSMUSP00000042123.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043843.11Link to Ensembl Protein Viewer:ENSMUSP00000042123.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043843Re-query CCDS DB by Protein ID:ENSMUSP00000042123
Original member Current member NCBI NM_010688.5 NP_034818.1 Accepted alive Link to Nucleotide Sequence:NM_010688.5Link to Protein Sequence:NP_034818.1Re-query CCDS DB by Nucleotide ID:NM_010688Re-query CCDS DB by Protein ID:NP_034818Link to BLAST:NP_034818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034818.1 263 Q61792 263 100% 0 0

Chromosomal Locations for CCDS 25332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97799794 97799862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97806825 97806919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97815698 97815782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97824842 97824949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97833546 97833702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97834084 97834187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97836072 97836245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGAACCCTAACTGTGCCCGGTGCGGCAAGATCGTGTACCCCACGGAGAAGGTGAACTGTCTGGATAAGT
ACTGGCATAAAGCATGCTTTCACTGCGAGACCTGCAAGATGACCCTGAACATGAAGAACTACAAGGGTTA
TGAGAAGAAGCCTTACTGCAATGCACACTATCCCAAGCAGTCCTTCACCATGGTGGCCGACACTCCGGAA
AATCTCCGCCTCAAGCAACAGAGCGAGCTGCAGAGTCAGGTGCGCTACAAGGAGGAATTTGAGAAGAATA
AGGGCAAAGGTTTCAGCGTGGTGGCAGACACGCCTGAGCTGCAGAGAATCAAGAAGACCCAGGACCAGAT
CAGCAATATCAAATACCATGAGGAGTTTGAGAAGAGCCGCATGGGGCCCAGTGGAGGAGAAGGGGTGGAA
CCAGAGCGCCGAGAAGCCCAGGACAGCAGCAGCTACCGGAGGCCCACAGAGCAGCAGCAGCCGCAGCCTC
ACCATATCCCGACCAGTGCCCCCGTGTACCAGCAGCCCCAGCAGCAGCAGATGACCTCGTCCTATGGTGG
GTACAAGGAGCCAGCAGCCCCTGTCTCCATACAGCGCAGTGCCCCAGGTGGCGGTGGGAAACGGTACCGT
GCAGTGTATGACTACAGCGCTGCCGACGAGGACGAGGTCTCCTTCCAGGATGGGGACACCATCGTCAATG
TGCAGCAGATCGATGACGGCTGGATGTACGGGACCGTAGAGCGCACCGGTGACACGGGGATGCTGCCAGC
CAACTACGTGGAGGCCATCTGA

Translation (263 aa):
MNPNCARCGKIVYPTEKVNCLDKYWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQSFTMVADTPE
NLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKYHEEFEKSRMGPSGGEGVE
PERREAQDSSSYRRPTEQQQPQPHHIPTSAPVYQQPQQQQMTSSYGGYKEPAAPVSIQRSAPGGGGKRYR
AVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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