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Report for CCDS47494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47494.1 Public Homo sapiens 6 PHACTR2 24 110 108 CCDS HistoryNCBI Gene:9749Re-query CCDS DB by CCDS ID:47494.1Re-query CCDS DB by GeneID:9749See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47494.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367582.7 ENSP00000356554.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367582.7Link to Ensembl Protein Viewer:ENSP00000356554.3Re-query CCDS DB by Nucleotide ID:ENST00000367582Re-query CCDS DB by Protein ID:ENSP00000356554
Original member Current member NCBI NM_001100165.2 NP_001093635.1 Accepted alive Link to Nucleotide Sequence:NM_001100165.2Link to Protein Sequence:NP_001093635.1Re-query CCDS DB by Nucleotide ID:NM_001100165Re-query CCDS DB by Protein ID:NP_001093635Link to BLAST:NP_001093635.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093635.1 565 O75167-2 565 100% 0 0

Chromosomal Locations for CCDS 47494.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143678164 143678209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143712016 143712183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143748985 143749065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143753754 143753912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143765261 143765798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143772258 143772457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143774059 143774215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143777328 143777383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143783219 143783280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143788773 143788910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143807057 143807133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143823674 143823689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGGGCCAGACCTCGGTGTCCACGCTGTCCCCGCAGCCCGGCAGCGTTGACGGACTGGACAAAGCTTCTA
TAGCAAACTCAGATGGCCCCACAGCAGGTTCCCAAACACCTCCCTTCAAAAGAAAGGGGAAACTATCCAC
CATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAAGAAGACCAGCGACAAATTTAGAGAAACCTCG
GCAGTATTAGAAAGGAAGATATCCACACGACAAAGTAGAGAGGAGCTGATAAGAAGGGGAGTGCTTAAGG
AATTGCCTGATCAAGATGGAGATGTAACAGTTAACTTTGAAAATTCAAACGGGCACATGATACCCATCGG
AGAGGAATCTACCCGAGAGGAAAATGTAGTAAAGTCTGAAGAAGGTAATGGCTCTGTATCTGAAAAAACA
CCACCTCTGGAGGAACAGGCAGAAGATAAGAAAGCTGGCTCCTCTCATTCAAAAAAAACAACTGGCTCTA
AAGCATCAGCTTCGCCATCCACTTCATCCACCTCATCTCGTCCCAAAGCTTCAAAGGAGACAGTTTCTAG
CAAAGCAGGGACAGTGGGGACCACCAAGGGCAAGAGAAAAACTGACAAGCAGCCAATAACTTCTCACCTG
TCCTCAGACACAACAACTTCTGGCACATCCGACCTGAAAGGAGAGCCTGCAGAGACCAGAGTGGAGAGTT
TCAAACTCGAACAGACTGTCCCTGGAGCTGAGGAGCAGAACACAGGCAAATTCAAGTCCATGGTCCCTCC
ACCCCCTGTGGCTCCAGCACCTTCTCCTCTGGCCCCCCCTCTCCCTCTTGAGGATCAGTGCATTACTGCC
TCAGACACTCCAGTTGTCCTCGTCAGCGTTGGAGCTGACCTGCCCGTCTCTGCCTTAGACCCAAGTCAGC
TTCTTTGGGCTGAAGAGCCGACGAACAGAACCACTCTCTACTCAGGCACTGGCTTAAGTGTTAACAGAGA
AAATGCAAAATGTTTCACAACCAAAGAGGAGCTGGGGAAGACAGTGCCTCAGCTACTGACTCCTGGGCTG
ATGGGCGAATCTTCAGAATCCTTTAGTGCCTCAGAAGATGAAGGCCACAGGGAATACCAAGCCAATGACT
CTGACTCGGACGGGCCTATCTTGTACACCGATGATGAGGACGAAGACGAAGATGAGGATGGCAGTGGAGA
AAGTGCTTTGGCAAGTAAAATACGCCGGAGGGATACTCTTGCTATCAAACTTGGCAACAGACCATCTAAG
AAAGAACTAGAGGACAAAAACATCTTGCAGCGTACATCTGAAGAAGAGAGGCAGGAAATCCGACAACAAA
TTGGAACCAAGTTAGTCAGGAGGCTGAGCCAGAGGCCCACAACTGAAGAATTAGAGCAAAGAAACATCCT
AAAACAAAAGAATGAAGAAGAGGAACAAGAAGCAAAAATGGAACTTAAACGCAGACTCAGCAGAAAGCTC
AGCCTGAGACCCACAGTGGCAGAGCTACAAGCTCGAAGGATCCTGCGATTTAACGAGTATGTAGAAGTCA
CGGATTCTCCTGACTATGACCGCCGAGCAGACAAGCCCTGGGCCAGGTTAACACCTGCAGACAAGGCAGC
AATAAGGAAAGAACTAAATGAATTTAAAAGCACAGAAATGGAAGTTCATGAAGAGAGTCGACAGTTTACA
AGGTTTCATCGTCCATAA

Translation (565 aa):
MGQTSVSTLSPQPGSVDGLDKASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETS
AVLERKISTRQSREELIRRGVLKELPDQDGDVTVNFENSNGHMIPIGEESTREENVVKSEEGNGSVSEKT
PPLEEQAEDKKAGSSHSKKTTGSKASASPSTSSTSSRPKASKETVSSKAGTVGTTKGKRKTDKQPITSHL
SSDTTTSGTSDLKGEPAETRVESFKLEQTVPGAEEQNTGKFKSMVPPPPVAPAPSPLAPPLPLEDQCITA
SDTPVVLVSVGADLPVSALDPSQLLWAEEPTNRTTLYSGTGLSVNRENAKCFTTKEELGKTVPQLLTPGL
MGESSESFSASEDEGHREYQANDSDSDGPILYTDDEDEDEDEDGSGESALASKIRRRDTLAIKLGNRPSK
KELEDKNILQRTSEEERQEIRQQIGTKLVRRLSQRPTTEELEQRNILKQKNEEEEQEAKMELKRRLSRKL
SLRPTVAELQARRILRFNEYVEVTDSPDYDRRADKPWARLTPADKAAIRKELNEFKSTEMEVHEESRQFT
RFHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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