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Report for CCDS4416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4416.1 Public Homo sapiens 5 MXD3 24 110 108 CCDS HistoryNCBI Gene:83463Re-query CCDS DB by CCDS ID:4416.1Re-query CCDS DB by GeneID:83463See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4416.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439742.7 ENSP00000401867.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000439742.7Link to Ensembl Protein Viewer:ENSP00000401867.2Re-query CCDS DB by Nucleotide ID:ENST00000439742Re-query CCDS DB by Protein ID:ENSP00000401867
Original member Current member EBI ENST00000513063.5 ENSP00000421463.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513063.5Link to Ensembl Protein Viewer:ENSP00000421463.1Re-query CCDS DB by Nucleotide ID:ENST00000513063Re-query CCDS DB by Protein ID:ENSP00000421463
Original member Current member NCBI NM_001394986.1 NP_001381915.1 Accepted alive Link to Nucleotide Sequence:NM_001394986.1Link to Protein Sequence:NP_001381915.1Re-query CCDS DB by Nucleotide ID:NM_001394986Re-query CCDS DB by Protein ID:NP_001381915Link to BLAST:NP_001381915.1
Original member Current member NCBI NM_031300.4 NP_112590.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031300.4Link to Protein Sequence:NP_112590.1Re-query CCDS DB by Nucleotide ID:NM_031300Re-query CCDS DB by Protein ID:NP_112590Link to BLAST:NP_112590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381915.1 206 Q9BW11-1 206 100% 0 0
NP_112590.1 206 Q9BW11-1 206 100% 0 0

Chromosomal Locations for CCDS 4416.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 177307588 177307703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177307781 177307964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177310426 177310540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177310668 177310697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177311379 177311484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177311761 177311830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGAACCCTTGGCCAGCAACATCCAGGTCCTGCTGCAGGCGGCCGAGTTCCTGGAGCGCCGTGAGAGAG
AGGCCGAGCATGGTTATGCGTCCCTGTGCCCGCATCGCAGTCCAGGCCCCATCCACAGGAGGAAGAAGCG
ACCCCCCCAGGCTCCTGGCGCGCAGGACAGCGGGCGGTCAGTGCACAATGAACTGGAGAAGCGCAGGAGG
GCCCAGTTGAAGCGGTGCCTGGAGCGGCTGAAGCAGCAGATGCCCCTGGGGGCCGACTGTGCCCGGTACA
CCACGCTGAGCCTGCTGCGCCGTGCCAGGATGCACATCCAGAAGCTGGAGGATCAGGAGCAGCGGGCCCG
ACAGCTCAAGGAGAGGCTGCGCAGCAAGCAGCAGAGCCTGCAGCGGCAGCTGGAGCAGCTCCGGGGGCTG
GCAGGGGCGGCCGAGCGGGAGCGGCTGCGGGCGGACAGTCTGGACTCCTCAGGCCTCTCCTCTGAGCGCT
CAGACTCAGACCAAGAGGAGCTGGAGGTGGATGTGGAGAGCCTGGTGTTTGGGGGTGAGGCCGAGCTGCT
GCGGGGCTTCGTCGCCGGCCAGGAGCACAGCTACTCGCACGGCGGCGGCGCCTGGCTATGA

Translation (206 aa):
MEPLASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRSVHNELEKRRR
AQLKRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLKERLRSKQQSLQRQLEQLRGL
AGAAERERLRADSLDSSGLSSERSDSDQEELEVDVESLVFGGEAELLRGFVAGQEHSYSHGGGAWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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