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Report for CCDS3338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3338.1 Public Homo sapiens 4 SLC49A3 24 110 108 CCDS HistoryNCBI Gene:84179Re-query CCDS DB by CCDS ID:3338.1Re-query CCDS DB by GeneID:84179See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322224.9 ENSP00000320234.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322224.9Link to Ensembl Protein Viewer:ENSP00000320234.4Re-query CCDS DB by Nucleotide ID:ENST00000322224Re-query CCDS DB by Protein ID:ENSP00000320234
Original member Current member NCBI NM_032219.4 NP_115595.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032219.4Link to Protein Sequence:NP_115595.2Re-query CCDS DB by Nucleotide ID:NM_032219Re-query CCDS DB by Protein ID:NP_115595Link to BLAST:NP_115595.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115595.2 559 Q6UXD7-2 559 100% 0 0

Chromosomal Locations for CCDS 3338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 681958 682376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 682781 682890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 683210 683367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 683609 683761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 684483 684599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 684719 684856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 685835 685911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 686089 686302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 686532 686690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 688993 689127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGCGGGGCCGACGGAGGCCGAGACGGGGTTGGCCGAGCCCCGGGCCCTGTGCGCGCAGCGGGGCCACC
GCACCTACGCGCGCCGCTGGGTGTTCCTGCTCGCGATCAGCCTGCTCAACTGCTCCAACGCCACGCTGTG
GCTCAGCTTTGCACCTGTGGCTGACGTCATTGCTGAGGACTTGGTCCTGTCCATGGAGCAGATCAACTGG
CTGTCACTGGTCTACCTCGTGGTATCCACCCCATTTGGCGTGGCGGCCATCTGGATCCTGGACTCCGTCG
GGCTCCGTGCGGCGACCATCCTGGGTGCGTGGCTGAACTTTGCCGGGAGTGTGCTACGCATGGTGCCCTG
CATGGTTGTTGGGACCCAAAACCCATTTGCCTTCCTCATGGGTGGCCAGAGCCTCTGTGCCCTTGCCCAG
AGCCTGGTCATCTTCTCTCCAGCCAAGCTGGCTGCCTTGTGGTTCCCAGAGCACCAGCGAGCCACGGCCA
ACATGCTCGCCACCATGTCGAACCCTCTGGGCGTCCTTGTGGCCAATGTGCTGTCCCCTGTGCTGGTCAA
GAAGGGTGAGGACATTCCGTTAATGCTCGGTGTCTATACCATCCCTGCTGGCGTCGTCTGCCTGCTGTCC
ACCATCTGCCTGTGGGAGAGTGTGCCCCCCACCCCGCCCTCTGCCGGGGCTGCCAGCTCCACCTCAGAGA
AGTTCCTGGATGGGCTCAAGCTGCTCATGTGGAACAAGGCCTATGTCATCCTGGCTGTGTGCTTGGGGGG
AATGATCGGGATCTCTGCCAGCTTCTCAGCCCTCCTGGAGCAGATCCTCTGTGCAAGCGGCCACTCCAGT
GGGTTTTCCGGCCTCTGTGGCGCTCTCTTCATCACGTTTGGGATCCTGGGGGCACTGGCTCTCGGCCCCT
ATGTGGACCGGACCAAGCACTTCACTGAGGCCACCAAGATTGGCCTGTGCCTGTTCTCTCTGGCCTGCGT
GCCCTTTGCCCTGGTGTCCCAGCTGCAGGGACAGACCCTTGCCCTGGCTGCCACCTGCTCGCTGCTCGGG
CTGTTTGGCTTCTCGGTGGGCCCCGTGGCCATGGAGTTGGCGGTCGAGTGTTCCTTCCCCGTGGGGGAGG
GGGCTGCCACAGGCATGATCTTTGTGCTGGGGCAGGCCGAGGGAATACTCATCATGCTGGCAATGACGGC
ACTGACTGTGCGACGCTCGGAGCCGTCCTTGTCCACCTGCCAGCAGGGGGAGGATCCACTTGACTGGACA
GTGTCTCTGCTGCTGATGGCCGGCCTGTGCACCTTCTTCAGCTGCATCCTGGCGGTCTTCTTCCACACCC
CATACCGGCGCCTGCAGGCCGAGTCTGGGGAGCCCCCCTCCACCCGTAACGCCGTGGGCGGCGCAGACTC
AGGGCCGGGTGTGGACCGAGGGGGAGCAGGAAGGGCTGGGGTCCTGGGGCCCAGCACGGCGACTCCGGAG
TGCACGGCGAGGGGGGCCTCGCTAGAGGACCCCAGAGGGCCCGGGAGCCCCCACCCAGCCTGCCACCGAG
CGACTCCCCGTGCGCAAGGCCCAGCAGCCACCGACGCGCCCTCCCGCCCCGGCAGACTCGCAGGCAGGGT
CCAAGCGTCCAGGTTTATTGACCCGGCTGGGTCTCACTCCTCCTTCTCCTCCCCGTGGGTGATCACGTAG

Translation (559 aa):
MAGPTEAETGLAEPRALCAQRGHRTYARRWVFLLAISLLNCSNATLWLSFAPVADVIAEDLVLSMEQINW
LSLVYLVVSTPFGVAAIWILDSVGLRAATILGAWLNFAGSVLRMVPCMVVGTQNPFAFLMGGQSLCALAQ
SLVIFSPAKLAALWFPEHQRATANMLATMSNPLGVLVANVLSPVLVKKGEDIPLMLGVYTIPAGVVCLLS
TICLWESVPPTPPSAGAASSTSEKFLDGLKLLMWNKAYVILAVCLGGMIGISASFSALLEQILCASGHSS
GFSGLCGALFITFGILGALALGPYVDRTKHFTEATKIGLCLFSLACVPFALVSQLQGQTLALAATCSLLG
LFGFSVGPVAMELAVECSFPVGEGAATGMIFVLGQAEGILIMLAMTALTVRRSEPSLSTCQQGEDPLDWT
VSLLLMAGLCTFFSCILAVFFHTPYRRLQAESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPE
CTARGASLEDPRGPGSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAGSHSSFSSPWVIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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