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Report for CCDS46078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46078.1 Public Homo sapiens 19 ZNF780A 24 110 108 CCDS HistoryNCBI Gene:284323Re-query CCDS DB by CCDS ID:46078.1Re-query CCDS DB by GeneID:284323See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000414720.6 ENSP00000416294.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414720.6Link to Ensembl Protein Viewer:ENSP00000416294.1Re-query CCDS DB by Nucleotide ID:ENST00000414720Re-query CCDS DB by Protein ID:ENSP00000416294
Original member Current member NCBI NM_001142579.2 NP_001136051.1 Accepted alive Link to Nucleotide Sequence:NM_001142579.2Link to Protein Sequence:NP_001136051.1Re-query CCDS DB by Nucleotide ID:NM_001142579Re-query CCDS DB by Protein ID:NP_001136051Link to BLAST:NP_001136051.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136051.1 158 O75290-2 158 100% 0 0

Chromosomal Locations for CCDS 46078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40072857 40072979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40076136 40076209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40081819 40081914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40083111 40083237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40084745 40084798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40089260 40089262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGGGAGAAGCCCGAGGAAGATTGACCAGTTTTGTAATTCTAGCAACATGGTCCATGGATCAGTGACAT
TCAGGGATGTGGCCATTGACTTCTCTCAGGAGGAGTGGGAGTGCCTGCAGCCTGATCAGAGGACCTTGTA
CAGGGATGTGATGTTGGAGAACTACAGCCACCTGATCTCACTGGGAAGTTCCATTTCTAAACCAGATGTA
ATTACGTTACTAGAGCAAGAGAAAGAGCCCTGGATGGTTGTAAGGAAAGAAACAAGCAGACGGTATCCAG
ATTTGGAGTTAAAATATGGACCTGAGAAAGTATCTCCAGAAAATGATACCTCTGAAGTAAATTTACCCAA
ACAGATTTCTTCATTGGCTTCCAAACCATCTTTTACAGCTATTCATATTCAAAGGAGAATCCATTGCAGA
ATCTGCATTGCATTTGGTTATCTCTCTTTAGTGTATTGTAGCCTGGAAATCCTATGA

Translation (158 aa):
MGRSPRKIDQFCNSSNMVHGSVTFRDVAIDFSQEEWECLQPDQRTLYRDVMLENYSHLISLGSSISKPDV
ITLLEQEKEPWMVVRKETSRRYPDLELKYGPEKVSPENDTSEVNLPKQISSLASKPSFTAIHIQRRIHCR
ICIAFGYLSLVYCSLEIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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