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Report for CCDS25409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25409.1 Public Mus musculus 11 Krt13 23 108 98 CCDS HistoryNCBI Gene:16663Re-query CCDS DB by CCDS ID:25409.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25409.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007275.2 ENSMUSP00000007275.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007275.2Link to Ensembl Protein Viewer:ENSMUSP00000007275.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000007275Re-query CCDS DB by Protein ID:ENSMUSP00000007275
Original member Current member NCBI NM_010662.2 NP_034792.1 Accepted alive Link to Nucleotide Sequence:NM_010662.2Link to Protein Sequence:NP_034792.1Re-query CCDS DB by Nucleotide ID:NM_010662Re-query CCDS DB by Protein ID:NP_034792Link to BLAST:NP_034792.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034792.1 437 P08730-1 437 100% 0 0

Chromosomal Locations for CCDS 25409.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100117596 100117666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100117983 100118005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100118733 100118953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100119044 100119169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100119281 100119442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100119622 100119778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100119973 100120055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100121025 100121495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGAGCTGCCGCTTCCAGAGTTCCTCCATGAGCTATGGAGGTGGTTTCGGAGCTGGTTCTTGCCAGCTTG
GAGGAGGCCGTAATATCTCCTCCTGCTCATCTCGGTTTGTCACTGGAGGGTCAGCTGGAGGCTATGGAGG
GGGCATGAGCTGTGGCTTTGGTGGAGGAGCTGGTGGTGGCTTTGGAGGTGGCTTTGGAGGTGGCTTTGGA
GGTAGCTATGGCGGAGGTTTTGGCGGTGGCTTTGGTGACTTCGGAGGTGTCGATGGTGGCCTCCTCTCTG
GCAACGAGAAGATCACCATGCAGAACCTCAATGACCGCCTGGCCAGCTACCTGGATAAGGTGCGCGCCTT
GGAGGCAGCCAATGCCGACCTGGAGGTGAAGATTCGTGACTGGCATCTGAAACAGAGCCCAGCTAGTCCA
GAGCGGGACTACAGTGCTTATTATAAGACCATCGAGGAGCTCCGGATCAAGATTCTGGAAGCCACCACGG
ACAACAACCGGATCATCCTGGAGATTGACAATGCCAGGCTGGCTGCAGATGACTTCAGGCTCAAGTACGA
AAATGAGCTGACCTTGCGCCAGAGCGTGGAGGCCGACATCAACGGCCTGCGCAGGGTGCTGGATGAGCTG
ACTCTGGCTAAGACTGACCTGGAAATGCAGATTGAGAGCCTGAATGAAGAACTGGCTTACCTGAAGAAGA
ACCACGAAGAGGAGATGAAGGAATTCAGCAACCAGGTAGTAGGCCAGGTCAATGTGGAGATGGACGCCAC
CCCTGGCATTGATCTGACCCGTGTGCTGGCTGAGATGAGGGAGCAGTATGAAGCCCTGGCAGAGAAGAAT
CGGAGGGATGCTGAGGAATGGTTCCAGACCAAGAGTGCAGAGCTGAACAAGGAAGTATCCTCCAACGCTG
AAATGATCCAGACCAGCAAGACAGAGATCACAGAACTCAGGCGCACACTCCAGGGCCTGGAGATTGAGCT
GCAGTCCCAGCTGAGCATGAAAGCCGGCCTGGAAAGTACGTTGGCAGAGACAGAGTGCCGCTACGCCCTG
CAGCTGCAACAGATCCAGGGGCTCATCAGCAGCATCGAGGCTCAGCTGAGCGAGCTCCGAAGTGAGATGG
AGTGCCAGAACCAGGAATACAAGATGCTGTTGGACATCAAAACAAGGCTGGAACAGGAGATCGCCACCTA
CCGCAGCCTGCTAGAGGGCCAGGATGCTAAGATGACCGGCTTCAACTCCGGAGGAAATAACACTACTACC
TCCAACGGGTCCCCCTCCTCCAATTCCGGTCGCCCAGATTTCCGAAAGTATTAA

Translation (437 aa):
MSCRFQSSSMSYGGGFGAGSCQLGGGRNISSCSSRFVTGGSAGGYGGGMSCGFGGGAGGGFGGGFGGGFG
GSYGGGFGGGFGDFGGVDGGLLSGNEKITMQNLNDRLASYLDKVRALEAANADLEVKIRDWHLKQSPASP
ERDYSAYYKTIEELRIKILEATTDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDEL
TLAKTDLEMQIESLNEELAYLKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYEALAEKN
RRDAEEWFQTKSAELNKEVSSNAEMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTLAETECRYAL
QLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIATYRSLLEGQDAKMTGFNSGGNNTTT
SNGSPSSNSGRPDFRKY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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