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Report for CCDS24203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24203.1 Public Mus musculus 10 Helb 23 108 98 CCDS HistoryNCBI Gene:117599Re-query CCDS DB by CCDS ID:24203.1Re-query CCDS DB by GeneID:117599See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020449.11 ENSMUSP00000020449.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020449.11Link to Ensembl Protein Viewer:ENSMUSP00000020449.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020449Re-query CCDS DB by Protein ID:ENSMUSP00000020449
Original member Current member NCBI NM_080446.2 NP_536694.2 Accepted alive Link to Nucleotide Sequence:NM_080446.2Link to Protein Sequence:NP_536694.2Re-query CCDS DB by Nucleotide ID:NM_080446Re-query CCDS DB by Protein ID:NP_536694Link to BLAST:NP_536694.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536694.2 1074 Q6NVF4 1074 100% 0 0

Chromosomal Locations for CCDS 24203.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 120084812 120084973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120089408 120089875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120091609 120091752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120092484 120092688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120094227 120094286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120095101 120095191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120098182 120098336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120101398 120101539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120102770 120102944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120105159 120106037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120108886 120109055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120110833 120111228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120112685 120112862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3225 nt):
ATGGCTAGGCAGGATCGTCTGCGCGAGCTCCTGGGCCCTCTGCACCCGTACAAGAGCGACGACGAGGAGG
AGGATTGTGCGCAGGAGGAGGAGGGGGAGCAGGAGGAGGAGTTTGTGGATGCCGAGGAACTCTGCAGCGG
GGGCATCAAGGCGGGCAGCCTCCCTGGGCGCGCGCGAGTGTCTATCCCTGATGAGTATACTAAAGAGAAA
TGTACCGTGTACGGACGTTTCCCACTCAAAGGTCCGTGGTGGCGCGTGAAGGTCCAGGTCCTGAAACCCC
AGCGATCCAGGAGCTATCAAGTTCAAGGCTTTCCGGCATACTTTCTACAGGTTGATATGTCGCCACCAGA
TCAAAAACAAATCTGTTCGCTTTTTCTTAAAGAATGCAACTTAGCCTCTGAGCGCATACAGGAATTTTTA
AAATGGGTAGAAAAAGTGTCAAGCTTTGAAAATCTACACTTTGAAAATCTTTGGGAAACATTAAGGCTTT
TCTACAGAGAAACCGAAAAGAAAGATAAAAAGCTGTCTACACCAAGGGAGCAGCAGGGTGAGGAGATGAG
AGTGGAAAAATCATTCGCATTTATAAGTGCAATGGTAGCTCTGCAATTCCCCAAAGTCATGGAATTCCTT
CCATCGCTTTTCCCTCGACACTTCAAAAGGCTCATCAGCTCGAGTTCTGATTGGGTGCTGGGATGCATAG
AAGATGTTCTGGGTACACAGCCGTGGAAGCTGGGCTTCAGGAGGATAACCTACAGAGAAATGAAACTAGT
GCGCTGTGAGGCCAGCTGGACAGCGTTCAGTCAGTGCCCCTCGCTGCTCCAGCTGATGACGCCCCTGCAG
AAGAATGCATTGGTCATATATTCTAAGCTGAGGCAGACATGCAGAGAAGACGGACACACGTACATTGAAG
TAAAAGACTTGACCTCGGGCTTGTCGGAGCATATGTCATTCGAGGAAGCGTGTCAGTCTCTGGCGTTTCT
GAAGGACATTGACGTGGTCATTTATGAGAAGGACTATGTCTTTCTTTCTGAACTGTACGAGGCCGAGCAA
GACATCGCCTCCTCCATCTGCGAGCTGATGAGCAGACCTCCGTGGCACTTAAAAGTGGACGTGAAGAACG
TCCTGGCGTCAATTAGAGGCGCAAAGCCCAACGATCCAGGAAGTGCTGAGGCAGTGGAAGGGAGCAAGCC
GGAGGAGGTGGGGTCAGAGCAGGGTGACAGTGTTTTAGACGCCCAAGATGGCGATGACCATGTTAGAAGC
AATGGCGAACACGTCGCAAATGCAGAAATAAACGACGTCCCACTGGATCAAGATCAGGTGGTCGCCCTGG
AGACGATCTGCGCCAACGCGGTGACTGTCCTCAGTGGGAAAGGCGGCTGTGGGAAGACCACCATTGTTAG
CCGTCTTTTTAAGCACATGGAACATCTGGAAGAAACGGAAGTGCAGCAAGCCTGCGAGGATTTTGAACAA
GACCAGGAAGCCTCAGAAGAGTGGCTTGACTGTCCTAAGCAGAGCCCAGCCGGTGTGGACAAGGCTGTAG
AAGTCTTGCTCACCGCACCTACAGGGAAGGCTGCTGGCTTATTGAGGCAGAGGACCGATCTTCCGGCTTA
CACGCTGTGCCAGGTCAATTACAGCTTCTATATGTGGAAAACGAAAAATGAGGTGGACAAGCCGTGGAAA
TTCTCCACGGTTCGAGTTCTGGTTGTGGACGAAGGGAGTTTGGTGTCTGTAGGGATCTTCAAGTCAGTGT
TACAGTTGCTGTGCAAACACTCCAAGCTGTCCAAGCTCATCATCCTTGGTGATGTTAGACAGTTGCCCAG
TATTGAACCTGGTAACATGCTGCAGGATGTCTTTGAGACTCTTAAGTCAAGACAGTGTGCCATCGAACTA
AAGACGAACCACAGGACAGAGTCTCAGCTGATTGTGGACAATGCTACAAGAATCTCCAGACGTCAGTTTC
CAAAATTTGATGCTGAACTAAATATCTGTGGTAATCCTACATTACCTCTCTCCATTCAAGATAAGACATT
TATCTTTGTGAGACTCCCTGAAGAAGACAGCAGATCTCAGTCGTCTAAAGGTGAACACCGATCTAATTTA
TATACTGCAGTTAAAACTTTGCTTCAAGGAAAGGACTTCTGCTCTTTTGAAAGTTCAAAAACATCGCAAT
TTATTGCATTTAGAAGGCAAGACTGTGACCTCATCAATGACTGCTGCTGCAAGCACTACACAGGCCACCT
CATCAAAGACCATGAGAAGAAACTCATCTTTGCCGTCGGTGATAAGATCTGCTGTACCCGGAATGCATAC
CTCTCAGATTTACTCCCCGACAAAGACCAGGAAGCCGAGGGGAAAGGCTATGGAGACGCCCCTGACGACG
ATGCTAAAATCAAACAGGATTTCGAAAGCAGCACCCGCCTGTGCAACGGGGAAATATTTTTCATAACACG
GGATGTAACTGACGTAACTTTCAAAAGAAAAAGACTTCTGACCATTAATAACGAGGCCGGTTTGGAAGTG
ACTGTGGACTTTAGCAAACTAATGGCAAACTGTCAGATCAAGCATGCCTGGGCAAGGACCATTCATACTT
TTCAGGGGTCCGAGGAGAACACAGTCGTCTACGTCGTGGGGAAGGCAGGCCGCCAGCACTGGCAACATGT
TTACACGGCAGTGACCCGGGGCCGCTCCAGAGTGTACATCATCGCGCAGGAGTCTGAACTCAGGAGTGCC
ACCCGGAAGCGCGGTTTCCCCAGGCAGACGCGTTTGAAACACTTCTTGCAGAAGAAGCTCTCTGGCAGCT
GCGCACCCTCAACAGGTTTCGCATCCCAGCCTTCGAGCCCTCGAGTCGGAGGAAGACCTGACACCCAGCC
TCCAGCGTCACACCTCTGTAGAACCCCAGACAACAAAGCCACTGCAGACAGCGCCAGAGGCGACGAAAGA
TGGCTGTCAGCTTCTGTTAACGATGACGTGGATACGGATGAGGAGTCAGCACAGCTCAGAGGGTCCAAAA
GAATCGGTGACGGCTTCCCGTTTGATGAAGAAAGCCCCAGTAAATTCCGTATGGTTGAAGCGCCATCTCC
ACAGGTGTCCTCTGTGTTTCAGAATATGAGGTTGAATACTCTCACTCCCAGACAGCTTTTTAAACCCACC
GACAATCAAGACACAGGTACGGCAGGTGTGGCGGACGACGCCAACGATCCCAGCAATCAGGAGATGGAAA
TGTGA

Translation (1074 aa):
MARQDRLRELLGPLHPYKSDDEEEDCAQEEEGEQEEEFVDAEELCSGGIKAGSLPGRARVSIPDEYTKEK
CTVYGRFPLKGPWWRVKVQVLKPQRSRSYQVQGFPAYFLQVDMSPPDQKQICSLFLKECNLASERIQEFL
KWVEKVSSFENLHFENLWETLRLFYRETEKKDKKLSTPREQQGEEMRVEKSFAFISAMVALQFPKVMEFL
PSLFPRHFKRLISSSSDWVLGCIEDVLGTQPWKLGFRRITYREMKLVRCEASWTAFSQCPSLLQLMTPLQ
KNALVIYSKLRQTCREDGHTYIEVKDLTSGLSEHMSFEEACQSLAFLKDIDVVIYEKDYVFLSELYEAEQ
DIASSICELMSRPPWHLKVDVKNVLASIRGAKPNDPGSAEAVEGSKPEEVGSEQGDSVLDAQDGDDHVRS
NGEHVANAEINDVPLDQDQVVALETICANAVTVLSGKGGCGKTTIVSRLFKHMEHLEETEVQQACEDFEQ
DQEASEEWLDCPKQSPAGVDKAVEVLLTAPTGKAAGLLRQRTDLPAYTLCQVNYSFYMWKTKNEVDKPWK
FSTVRVLVVDEGSLVSVGIFKSVLQLLCKHSKLSKLIILGDVRQLPSIEPGNMLQDVFETLKSRQCAIEL
KTNHRTESQLIVDNATRISRRQFPKFDAELNICGNPTLPLSIQDKTFIFVRLPEEDSRSQSSKGEHRSNL
YTAVKTLLQGKDFCSFESSKTSQFIAFRRQDCDLINDCCCKHYTGHLIKDHEKKLIFAVGDKICCTRNAY
LSDLLPDKDQEAEGKGYGDAPDDDAKIKQDFESSTRLCNGEIFFITRDVTDVTFKRKRLLTINNEAGLEV
TVDFSKLMANCQIKHAWARTIHTFQGSEENTVVYVVGKAGRQHWQHVYTAVTRGRSRVYIIAQESELRSA
TRKRGFPRQTRLKHFLQKKLSGSCAPSTGFASQPSSPRVGGRPDTQPPASHLCRTPDNKATADSARGDER
WLSASVNDDVDTDEESAQLRGSKRIGDGFPFDEESPSKFRMVEAPSPQVSSVFQNMRLNTLTPRQLFKPT
DNQDTGTAGVADDANDPSNQEMEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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