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Report for CCDS17561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17561.1 Public Mus musculus 3 Ivl 23 108 98 CCDS HistoryNCBI Gene:16447Re-query CCDS DB by CCDS ID:17561.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053107.5 ENSMUSP00000059780.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053107.5Link to Ensembl Protein Viewer:ENSMUSP00000059780.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053107Re-query CCDS DB by Protein ID:ENSMUSP00000059780
Original member Current member NCBI NM_008412.3 NP_032438.2 Accepted alive Link to Nucleotide Sequence:NM_008412.3Link to Protein Sequence:NP_032438.2Re-query CCDS DB by Nucleotide ID:NM_008412Re-query CCDS DB by Protein ID:NP_032438Link to BLAST:NP_032438.2

Chromosomal Locations for CCDS 17561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92571350 92572756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGTCCCATCAACACACACTGCCAGTGACTGTTCCAGCTGTGGTTCAGGGACCTCTCAAGACTGTGTGTT
CTCCAGATCATATCCAGCAGGAACAAGCAAAGCAACCAACTCCACATCCTACACAATGCCAGGTCTTCAC
TGAGATTCAAGAGAAGGGCTTTCCCAAACATGAGGAGAAGCGGCCAAACCCTGTGAAGGATCTGCCTGAT
CAAAAGTGTGAGCACCAGCAGCAGCCAGGACCACAAAAGCAGCAGCTGCAGGTGAAAAAGTCACAGCAGG
AGCTGCAGGAACAGGAACTGCATCTGGAGAAGCAGCAGCTACCACAAGAGCCCCAGGGGCTCCTGTGCCT
GGAACAACAACAGCAGCAAGAGCCACAAATGCAAGAACAGCACCTCAGACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGACACAGGAGCAGGGTCTGTGCCTGGGGCAGC
AGAAGCAGCAGCAGCAGCAGCAAGACATGCTAGTACCACAGGAGCTACATCTGAGACAGCACCAGGAGAA
GCTGCAGGATCCAGAACTGCATCTGGGTCAGCAGCAGAAAACTCCAGAGGAGCAGAAACTGATTCCAGGA
GAAAAGCAGCAGGAGCTGCACCTGGGACAGAGGCACCAGGAGCCACAGGAGCAGGAGCTACACCTGGGAC
AGAAACAGAAGCAGAAGCTACATGAACCAGAACTGCAACTGGGAAAACAGCAGCACCAGAAGCCATCTGA
GCCAGAACTGCCTCTGGGAAAGCAGCAGCAGGAGTCACCTGAACCAGAACTGCCTCTGGGAAAGCAGCAG
CAGCAGGAGTCACCTGAGCCAGAACTGCAACTGGGAAAGCAGCAGCAGTCACATGAGCCGGATATGGCAG
GGGATCAGAAAGAGAAGCAGAAACTTCATAAGCCAGAACTGTACCTGAGAAAGCAGCAGTACCAGGAGTC
ACCTGACCCAGAGTTGTCCCTGGGAAAACAGCAGCACCAGGAGTGTCAGGAACCAGAACTGCAATTGGAA
GAGAAGCAGCATCAGAAGCCACCTGAACCAGAACTGCACCTGGGAAAGCAGCAGGAGTCACATGAGCCAG
ATATGGCAGAGGATCTGGAAGAGAAGCAGAAACTTGGTGAGCCAGAATTACACCTAGGAAAGCAGCAGCA
GCAACAGATAGAGCGTGAAGGTTATCAAGGACCAAAAAGCCTGGGTCAGTCACTTAAGCAAGAGAAAGCT
TCAAGGAAACAGCAGCTAGATTACTCACATCTAGAACAGGAGAAGGAGCTCTCAGACCAGCCACTGGATC
AAGCACTAGTAAAGAAGGGTAAACAACTGGAAAGGAAGAAACACGAATTGGAGAACCGGACACAGCAGGA
GAAGTAG

Translation (468 aa):
MSHQHTLPVTVPAVVQGPLKTVCSPDHIQQEQAKQPTPHPTQCQVFTEIQEKGFPKHEEKRPNPVKDLPD
QKCEHQQQPGPQKQQLQVKKSQQELQEQELHLEKQQLPQEPQGLLCLEQQQQQEPQMQEQHLRQQQQQQQ
QQQQQQQQQQQQETQEQGLCLGQQKQQQQQQDMLVPQELHLRQHQEKLQDPELHLGQQQKTPEEQKLIPG
EKQQELHLGQRHQEPQEQELHLGQKQKQKLHEPELQLGKQQHQKPSEPELPLGKQQQESPEPELPLGKQQ
QQESPEPELQLGKQQQSHEPDMAGDQKEKQKLHKPELYLRKQQYQESPDPELSLGKQQHQECQEPELQLE
EKQHQKPPEPELHLGKQQESHEPDMAEDLEEKQKLGEPELHLGKQQQQQIEREGYQGPKSLGQSLKQEKA
SRKQQLDYSHLEQEKELSDQPLDQALVKKGKQLERKKHELENRTQQEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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