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Report for CCDS11082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11082.1 Public Homo sapiens 17 FBXO39 24 110 108 CCDS HistoryNCBI Gene:162517Re-query CCDS DB by CCDS ID:11082.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11082.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321535.5 ENSP00000321386.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321535.5Link to Ensembl Protein Viewer:ENSP00000321386.4Re-query CCDS DB by Nucleotide ID:ENST00000321535Re-query CCDS DB by Protein ID:ENSP00000321386
Original member Current member NCBI NM_153230.3 NP_694962.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153230.3Link to Protein Sequence:NP_694962.1Re-query CCDS DB by Nucleotide ID:NM_153230Re-query CCDS DB by Protein ID:NP_694962Link to BLAST:NP_694962.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694962.1 442 Q8N4B4 442 100% 0 0

Chromosomal Locations for CCDS 11082.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6779869 6780891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6786780 6786956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6787300 6787428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGGACGAAGAAAGTGAACTGATCCAGCCCCAAGACCAGAGCTGCTGGGCCTTTCTGCCCGATTTGTGTC
TGTGCCGTGTTTTCTGGTGGCTAGGAGACAGGGACAGGTCCAGGGCTGCTCTTGTCTGCAGAAAGTGGAA
CCAGATGATGTATTCTGCTGAGCTCTGGCGGTACAGAACCATCACCTTCAGCGGGAGACCTTCCAGGGTA
CATGCATCTGAAGTTGAGTCAGCTGTTTGGTATGTTAAGAAGTTTGGTCGTTATCTGGAGCACCTGGAGG
TCAAATTCATGAATCCTTACAATGCTGTCTTGACCAAGAAGTTCCAGGTCACCATGCGGGGCCTCCTGTC
TTGTCTGAGTAAGAGCAACAACCGTCTGAAATCTCTTTCCATCCAATACCTGGAGCTGGACCGCCTGGTA
TGGAGGAACAGCATCAGGAGCTCATTCATCAGCAGCTTGAGCTTCTTCTTAAAGAAGATGGGCAAACGCC
TGGATTATCTCAACCTAAAAGGGGCCAGGCTGACCGTGGAGCAAGGCTGCCAAATTCTCGACTCCCTCAG
CTACATGAGGAATGAGAATGTGATCTCAGAGCTCAACATCGAGGACTATTTCAGCCATCACCTTGCTGTC
TACAACAGCCCCCAGTTCAAAAAGACCATGTCCACATTCCACAATCTTGTGTCCCTGAACCTCAACTACA
ACTGTATCTCCGACGAGCTGCTTGAGAACTTGTGTGAGAATGCCAGCACCCTCCGGACCATCAACATCAA
ATGCCACGTTCATGACCCCCACGGACAGGTCATCTGGGGTATGTCCTGGGCCAAGCTGGCCAGGCAGGCC
ACCAATCTGAAGGTGAACTTCTTCTTTGAACGGATCATGAAGTACGAACGCTTGGCCCGAATCCTCTTGC
AGGAGATCCCGATCAGGAGCATCAGTCTGAGAAGCTGCTATTTCAGTGACCCAGACTGTTCAATGAGACC
CACTCTGATAGATCTCCTGCCCACCTTCCGGCACACTCTGCAGAAATTAACTTGTGAATTCAACAACAAC
CATGAGTCACTCGACGAGGAGCTGCACCTCCTCATCATATCCTGCAGGAAGTTGTTTTACTTCAAAATCT
GGGCTTTCCTTGATGTTAGTTTTGTGGAGCGGATCCTGAAGAGTCAGAAAGAACGGCAGTGTGCCCTGCG
TGTATTCAAGGCGAGAATTTATACAAACAGATATGAGACGAATGAAGAGGACAAGACCCTGCAGGAAATT
TACAGGAAGTACAGAAAGCTGATCGAATCAGAGCTTAGCTATTTTGTCATCGTTTACTCTGTGATGTAA

Translation (442 aa):
MDEESELIQPQDQSCWAFLPDLCLCRVFWWLGDRDRSRAALVCRKWNQMMYSAELWRYRTITFSGRPSRV
HASEVESAVWYVKKFGRYLEHLEVKFMNPYNAVLTKKFQVTMRGLLSCLSKSNNRLKSLSIQYLELDRLV
WRNSIRSSFISSLSFFLKKMGKRLDYLNLKGARLTVEQGCQILDSLSYMRNENVISELNIEDYFSHHLAV
YNSPQFKKTMSTFHNLVSLNLNYNCISDELLENLCENASTLRTINIKCHVHDPHGQVIWGMSWAKLARQA
TNLKVNFFFERIMKYERLARILLQEIPIRSISLRSCYFSDPDCSMRPTLIDLLPTFRHTLQKLTCEFNNN
HESLDEELHLLIISCRKLFYFKIWAFLDVSFVERILKSQKERQCALRVFKARIYTNRYETNEEDKTLQEI
YRKYRKLIESELSYFVIVYSVM


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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