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Report for CCDS48385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48385.1 Public Mus musculus 1 Zbtb41 23 108 98 CCDS HistoryNCBI Gene:226470Re-query CCDS DB by CCDS ID:48385.1Re-query CCDS DB by GeneID:226470See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48385.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039867.9 ENSMUSP00000045570.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039867.9Link to Ensembl Protein Viewer:ENSMUSP00000045570.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039867Re-query CCDS DB by Protein ID:ENSMUSP00000045570
Original member NCBI NM_172643.5 NP_766231.2 Updated not alive Link to Nucleotide Sequence:NM_172643.5Link to Protein Sequence:NP_766231.2Re-query CCDS DB by Nucleotide ID:NM_172643Re-query CCDS DB by Protein ID:NP_766231
Current member NCBI NM_172643.6 NP_766231.2 Accepted alive Link to Nucleotide Sequence:NM_172643.6Link to Protein Sequence:NP_766231.2Re-query CCDS DB by Nucleotide ID:NM_172643Re-query CCDS DB by Protein ID:NP_766231Link to BLAST:NP_766231.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766231.2 908 Q811F1 908 100% 0 0

Chromosomal Locations for CCDS 48385.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 139423151 139424267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139429126 139429333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139430281 139430350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139431929 139432076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139437441 139437570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139438958 139439053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139440345 139440451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139441763 139441868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139442809 139442897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139446875 139447530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGAAGAAAAGGAGAAAGGTTACTTCAAATCTTGACGAGAAGATCCATCTAGGCTATCATAAAGACTCTT
CGGAAGAAAATGCTGCTGTGGAGTGTGGCCAAGTGACCTATACTCAGGCTCCAGAAAGACCAACCCCCGA
AGCTGCCCAGCGTTGCCAAGAACTGCCTCCCTCTCCAGATCAGAGAAAGCTTTTGAGTTCTTTGCAGTAT
AATAAGAATTTGCTGAAGTATTTGAACGATGATAGGCAGAAGCAACCGTCTTTCTGCGATTTACTTATCA
TAGTGGAAGGGAAAGAGTTTAGTGCGCATAAAGTGGTCGTTGCTGTCGGCAGTAGTTATTTTCATGCGTG
TCTGAGCAAAAATCCAAGCACTGATGTTGTCACCCTGGATCACGTAACGCATTCGGTTTTTCAGCATTTG
CTTGAGTTCCTCTACACATCGGAGTTTTTTGTGTACAAATACGAAATACCTCTTGTGTTAGAGGCTGCAA
AATTTTTGGACATCATCGATGCGGTAAAGCTGCTGAATAATGAGAATGTTGCTGCCTTTCAGGCCGAACT
GACTGAAAAGTCGTCACCAGAAGAAACACTAAATGAGCTAACTGGAAGACTGTCGAGTAGTCATCAGTGC
AAATTTTGTAGTAGGCATTTCTGCTATAAAAAGTCCTTAGAGAATCATTTAGCCAAAACTCACAGGTCTC
TGCTCCTTGGGAAAAAACATGGGTTAAAAATGCTGGAGAGAAGTTTTTCTACCCGGAGGTCAAAGAGGAA
TCGGAAGTGCCCTGTCAAGTTTGAGGATACCAGCGACGATGAACAGGAGAGTGGGGATGGGTCAGACAAT
TTGCATCAAGAAAGTTCTGAGAAGGAGAGGTCAGATAGAAATGATTCTGAGGACCCTGGCAGTGAATATA
ATGCCGAAGACGAAGAGCTGGAGGAGGAAGTGTCCGATGAAGACTCTGACACGGAGCAGAGTGACAAAGA
TAATGATGCAGAAGAGGAACCTGAGGCTGGCGACTCTGCCGGGAGCATCCATGAAGGGTTAGCTCCCGTC
ATCATTCAGAACAGCAATAAGAAAATCCTGCAGTGTCCCAAATGTGATAAGACATTTGACCGGATAGGGA
AATATGAGAGCCACACCCGTGTGCACACAGGTGAGAAGCCTTTTGAGTGTGATATTTGTCACCAGCGTTA
TTCGACAAAGTCTAACTTAACTGTTCACAGAAAGAAGCACAGTAACGAAGTAGAGTTTCATAGGAAGGAG
CACAAGTGCCCTTACTGTAACAAGCTGCACGCAAGCAAGAAGACACTGGCCAAGCACGTCAAGAGATTCC
ATCCTGAAAATGCACAAGAGTTTATTTCCATCAAGAAGACTAAGAGTGAAAGTTGGAAATGTGATATTTG
TAAGAAATCTTTTACTCGAAGACCACACTTGGAAGAACACATGATTCTGCATTCACAAGATAAACCCTTT
AAATGTACCTATTGTGAAGAACATTTCAAATCCCGGTTTGCACGGTTAAAGCATCAAGAGAAGTTCCACC
TGGGACCCTTTCCATGTGATATATGTGGTCGTCAGTTCAATGATACTGGAAATTTAAAACGCCATATAGA
ATGTACTCATGGTGGAAAGAGAAAATGGACTTGCTTTATTTGTGGGAAGTCAGTACGAGAAAGAACTACT
TTGAAAGAACATTTGAGAATACACAGTGGAGAAAAGCCTCATCTTTGCAGTATCTGTGGGCAGAGTTTTC
GTCATGGAAGCTCATACAGGCTTCACTTGCGAGTGCATCACGATGACAAGAGATATGAGTGTGATGAATG
CGGGAAAACGTTTATTCGCCATGACCACCTTACAAAGCACAAAAAAATACACTCAGGCGAGAAGGCTCAT
CAGTGTGAAGAGTGTGGAAAGTGCTTCGGGCGCAGGGACCACCTCACTGTGCATTACAAGAGTGTGCATC
TGGGAGAGAAGGTTTGGCAGAAATATAAAGCAACATTTCATCAATGTGATGTTTGTAAGAAGATTTTTAA
AGGAAAGTCAAGTCTGGAAATGCATTTTCGGACACATTCAGGTGAAAAACCATACAAGTGTCAAATTTGC
AATCAGTCGTTTAGAATTAAGAAAACTTTAACAAAACACCTGGTTATTCACTCTGATGCCCGGCCTTTCA
ATTGTCAACATTGCAATGCAACATTTAAGCGGAAAGATAAGCTGAAGTACCACATTGACCATGTTCATGG
GATAAAATCTCCTGATGATTCTCTCAGTACTTCTGAGGAAAAACTCATGTCTTTGCCAATGGAGTACTCA
TCTGATGATAAGATCTTTCAAGCAGAAACAAAACAGTATCTGGACCAGCCCAAAGTTTATCAGTCGGAAG
CCAAGACTATGCTACAGAACGTGTCTGCAGAAGTATGTGTTCCAGTAACATTGGTCCCAGTTCAAATGCC
TGACACATCCAGCGATCTGGTGCCTCATACCACCACACTTCCCACATCGTCCCATGAGATGCTGCCACCA
CAGCCACAGTCAACTGATTATCCTCGTGCAGCAGACTTAGCATTTCTGGAAAAATACACTCTTACTCCTC
AGCCTGCAAATATAGTTCATCCCGTCCGACCCGAACAGATGCTAGATCCTAGAGAACCATCTTATCTCGG
GACATTACTGGGCCTTGATAGCACAGCTGCTGTCCAGAATATGTGCAGTAGTGAGCATCGTTCATGA

Translation (908 aa):
MKKRRKVTSNLDEKIHLGYHKDSSEENAAVECGQVTYTQAPERPTPEAAQRCQELPPSPDQRKLLSSLQY
NKNLLKYLNDDRQKQPSFCDLLIIVEGKEFSAHKVVVAVGSSYFHACLSKNPSTDVVTLDHVTHSVFQHL
LEFLYTSEFFVYKYEIPLVLEAAKFLDIIDAVKLLNNENVAAFQAELTEKSSPEETLNELTGRLSSSHQC
KFCSRHFCYKKSLENHLAKTHRSLLLGKKHGLKMLERSFSTRRSKRNRKCPVKFEDTSDDEQESGDGSDN
LHQESSEKERSDRNDSEDPGSEYNAEDEELEEEVSDEDSDTEQSDKDNDAEEEPEAGDSAGSIHEGLAPV
IIQNSNKKILQCPKCDKTFDRIGKYESHTRVHTGEKPFECDICHQRYSTKSNLTVHRKKHSNEVEFHRKE
HKCPYCNKLHASKKTLAKHVKRFHPENAQEFISIKKTKSESWKCDICKKSFTRRPHLEEHMILHSQDKPF
KCTYCEEHFKSRFARLKHQEKFHLGPFPCDICGRQFNDTGNLKRHIECTHGGKRKWTCFICGKSVRERTT
LKEHLRIHSGEKPHLCSICGQSFRHGSSYRLHLRVHHDDKRYECDECGKTFIRHDHLTKHKKIHSGEKAH
QCEECGKCFGRRDHLTVHYKSVHLGEKVWQKYKATFHQCDVCKKIFKGKSSLEMHFRTHSGEKPYKCQIC
NQSFRIKKTLTKHLVIHSDARPFNCQHCNATFKRKDKLKYHIDHVHGIKSPDDSLSTSEEKLMSLPMEYS
SDDKIFQAETKQYLDQPKVYQSEAKTMLQNVSAEVCVPVTLVPVQMPDTSSDLVPHTTTLPTSSHEMLPP
QPQSTDYPRAADLAFLEKYTLTPQPANIVHPVRPEQMLDPREPSYLGTLLGLDSTAAVQNMCSSEHRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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