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Report for CCDS49247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49247.1 Public Mus musculus 13 Nedd9 23 108 98 CCDS HistoryNCBI Gene:18003Re-query CCDS DB by CCDS ID:49247.1Re-query CCDS DB by GeneID:18003See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49247.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021794.13 ENSMUSP00000021794.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021794.13Link to Ensembl Protein Viewer:ENSMUSP00000021794.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021794Re-query CCDS DB by Protein ID:ENSMUSP00000021794
Original member Current member NCBI NM_001111324.2 NP_001104794.1 Accepted alive Link to Nucleotide Sequence:NM_001111324.2Link to Protein Sequence:NP_001104794.1Re-query CCDS DB by Nucleotide ID:NM_001111324Re-query CCDS DB by Protein ID:NP_001104794Link to BLAST:NP_001104794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104794.1 833 O35177 833 100% 0 0

Chromosomal Locations for CCDS 49247.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 41311661 41312170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41314366 41314455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41315774 41317015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41317862 41317963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41318444 41318545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41338577 41339020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41425861 41425872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGTGGGCGAGGAATCTTATGGCAAGGGCCTTGTATGACAACGTCCCTGAGTGTGCTGAGGAGCTGGCCT
TCCGCAAGGGAGACATCTTAACTGTCATAGAGCAGAACACAGGAGGGCTTGAGGGATGGTGGCTGTGTTC
CCTCCACGGTCGCCAAGGCATTGTCCCAGGGAACCGGGTGAAGCTTCTGATTGGTCCAGTGCAAGAGACC
CCCGGTCATGAGCAGCCTACTCCTGGACCTATGCATCAGACCTTTGGCCAACAGAAACTCTATCAAGTGC
CAAATTCCCAGGCAGCATCTCGGGATACCATCTACCAAGTGCCACCCTCCTACCAGAATCAGGGAATTTA
CCAAGTACCCACTGGCCATGGCACTCCAGAACAAGATGTATATCAAGTACCACCATCAGTTCAGAGGAAC
ATTGGCGGCACTAATGGACCCCTTCTAAGCAAAAAGGTGATCACCCCAGTGAGGACGGGCCATGGCTATG
TGTACGAGTACCCATCCAGATACCAAAAGGATGTCTACGATGTCCCTCCTTCCCACAGCACTCAAGGGGT
ATATGACATCCCTCCTTCCTCAGTAAAAGGCCCTGTGTTTTCAGTTCCAGTGGGAGAGATAAAACCTCAA
GGGGTATATGACATTCCCCCCACCCAAGGGGTCTATGCCATTCCACCATCGGCTTGCCGAGATGAGGCAG
GGCTCAGGGAAAAGGAATATGATTTCCCTCCTCCAATGAAGCAAGATGGAAAACCAGACACCAGACCTGA
GGGGGTTTATGACATCCCTCCAACCAGCACCAAGACAGCAGGCAAGGACCTTCACATCAAATTCCCCTGT
GATGCTCCAGGAGGTGTCGAACCAATGGCACGAAGACACCAGAGCTTTTCCCTGCACCATGCACCCTCTC
AGCTGGGACAGTCTGGGGACACTCAGAGTGATGCCTATGATGTCCCCCGGGGAGTTCAGTTTCTGGAGGT
ACCAACAGAAACCAGTGAAAAGGCAAATCCGGAGGAAAGAGACGGTGTCTACGATGTCCCTCTGCACAAC
CCAGCAGATGCCAAAGGCTCTCGGGACGTGGTAGATGGGATCAACAGACTGTCTTTCTCCAGCACTGGCA
GTACCAGGAGTAACATGTCCACCTCTTCCACCTCCTCAAAGGAGTCTTCACTGTCAGCCTCCCCGTCTCA
AGACAAAAGGCTCCGACTGGACCCAGACACAGCCATAGAGAAGCTCTATCGGCTCCAGCAGACCCTGGAG
ATGGGTGTGTGCAGCCTCATGTCACTGGTCACCACAGACTGGAGGTGCTACGGATACATGGAAAGGCACA
TCAATGAGATCCGCACCGCGGTGGACAAAGTAGAGCTGTTCTTACGAGAATACCTCCATTTTGCCAAGGG
AGCTTTAGCCAATGCCTCCTGCCTCCCAGAACTGGTCCTCCACAACAAAATGAAGCGGGAACTCCAAAGA
GTAGAAGATTCCCACCAGATTCTAAGCCAAACCAGCCATGACTTGAATGAATGCAGCTGGTCCCTGAATA
TTTTAGCTATCAATAAGCCCCAAAATAAGTGTGATGACCTAGACCGGTTTGTGATGGTCGCCAAGACAGT
GCCAGACGACGCCAAACAACTGACCACCACCATCAGCACCTACGCGGAGACCCTCTTTAGAGCAGATCCT
GCCAATTCCCATCTGAAGAATGGGCCCAACAGCATCATGAACTCAAGCGAGTACACACATCCGGGCTCCC
AGATGCAGCCACTGCATCCTGGTGACTACAAAGCCCAGGTCCACAGTAAGCCGTTGCCTCCTAGTCTAAG
CAAGGACCAGCCACCAGACTGCGGTAGCAGTGACGGTTCTGAGCGGAGTTGGATGGATGATTATGATTAT
GTTCACCTACAGGGCAAGGAGGAGTTTGAGCGACAGCAGAAGGAGCTCTTGGAAAAGGAGAACATCATGA
AGCAGAGTAAGGCGCAGCTGGAGCATCACCAGCTGAGTCAGTTCCAGCTGTTGGAACAAGAGATCACCAA
GCCTGTGGAGAATGACATCTCTAAATGGAAGCCCTCTCAGAGCCTCCCAACCACCAACAACAGTGTGGGT
GCTCAGGATAGGCAGTTGCTTTGCTTCTACTATGACCAGTGCGAGACCCATTTCATTTCCCTACTCAACG
CCATCGACGCCCTCTTCAGCTGCGTCAGCTCAGCCCAACCCCCACGGATCTTTGTGGCGCACAGCAAGTT
TGTCATTCTTAGTGCGCACAAACTGGTGTTCATTGGAGACACTCTGACAAGGCAGGTGGCTGCCCAGGAC
ATTCGCAACAAAGTCAGGAACTCCAGCAACCAGCTCTGCGAACAGCTCAAGACGATAGTGATGGCGACCA
AAATGGCCGCCCTCCACTACCCCAGTACCACCGCCTTGCAGGAAATGGTGCACCAGGTGACAGACCTGTC
CAGAAATGCTCAGCTGTTTAAGCGTTCCTTGCTGGAGATGGCCACCTTTTGA

Translation (833 aa):
MWARNLMARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIVPGNRVKLLIGPVQET
PGHEQPTPGPMHQTFGQQKLYQVPNSQAASRDTIYQVPPSYQNQGIYQVPTGHGTPEQDVYQVPPSVQRN
IGGTNGPLLSKKVITPVRTGHGYVYEYPSRYQKDVYDVPPSHSTQGVYDIPPSSVKGPVFSVPVGEIKPQ
GVYDIPPTQGVYAIPPSACRDEAGLREKEYDFPPPMKQDGKPDTRPEGVYDIPPTSTKTAGKDLHIKFPC
DAPGGVEPMARRHQSFSLHHAPSQLGQSGDTQSDAYDVPRGVQFLEVPTETSEKANPEERDGVYDVPLHN
PADAKGSRDVVDGINRLSFSSTGSTRSNMSTSSTSSKESSLSASPSQDKRLRLDPDTAIEKLYRLQQTLE
MGVCSLMSLVTTDWRCYGYMERHINEIRTAVDKVELFLREYLHFAKGALANASCLPELVLHNKMKRELQR
VEDSHQILSQTSHDLNECSWSLNILAINKPQNKCDDLDRFVMVAKTVPDDAKQLTTTISTYAETLFRADP
ANSHLKNGPNSIMNSSEYTHPGSQMQPLHPGDYKAQVHSKPLPPSLSKDQPPDCGSSDGSERSWMDDYDY
VHLQGKEEFERQQKELLEKENIMKQSKAQLEHHQLSQFQLLEQEITKPVENDISKWKPSQSLPTTNNSVG
AQDRQLLCFYYDQCETHFISLLNAIDALFSCVSSAQPPRIFVAHSKFVILSAHKLVFIGDTLTRQVAAQD
IRNKVRNSSNQLCEQLKTIVMATKMAALHYPSTTALQEMVHQVTDLSRNAQLFKRSLLEMATF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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