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Report for CCDS22295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22295.1 Public Mus musculus 8 Irf2 23 108 98 CCDS HistoryNCBI Gene:16363Re-query CCDS DB by CCDS ID:22295.1Re-query CCDS DB by GeneID:16363See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034041.8 ENSMUSP00000034041.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034041.8Link to Ensembl Protein Viewer:ENSMUSP00000034041.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034041Re-query CCDS DB by Protein ID:ENSMUSP00000034041
Original member Current member NCBI NM_008391.4 NP_032417.3 Accepted alive Link to Nucleotide Sequence:NM_008391.4Link to Protein Sequence:NP_032417.3Re-query CCDS DB by Nucleotide ID:NM_008391Re-query CCDS DB by Protein ID:NP_032417Link to BLAST:NP_032417.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032417.3 349 P23906 349 100% 0 0

Chromosomal Locations for CCDS 22295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 46793499 46793585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46806471 46806570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46807222 46807398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46807705 46807751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46818791 46818908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46837674 46837838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46844821 46844867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46845914 46846222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGCCGGTGGAACGGATGCGAATGCGCCCGTGGCTGGAGGAGCAGATAAATTCCAATACGATACCAGGGC
TAAAGTGGCTGAACAAGGAGAAGAAGATTTTCCAGATCCCCTGGATGCATGCGGCTCGGCACGGATGGGA
CGTGGAAAAGGATGCTCCGCTCTTCAGAAACTGGGCGATCCATACAGGAAAGCATCAACCAGGAATAGAT
AAACCAGATCCAAAAACATGGAAAGCAAATTTTCGATGTGCCATGAATTCCCTGCCCGACATTGAGGAAG
TGAAGGACAGAAGCATAAAGAAAGGAAACAACGCCTTCAGAGTCTACCGGATGCTGCCCTTATCCGAACG
ACCTTCCAAGAAAGGAAAGAAACCAAAGACAGAAAAAGAAGAGAGAGTTAAGCACATCAAGCAAGAACCA
GTTGAGTCATCTTTGGGGCTTAGTAATGGAGTAAGTGGCTTTTCTCCTGAGTATGCGGTCCTGACTTCAG
CTATAAAAAATGAAGTGGATAGTACGGTGAACATCATAGTTGTAGGACAGTCCCATCTGGACAGCAACAT
TGAAGATCAAGAGATCGTCACTAACCCGCCAGACATCTGCCAGGTTGTAGAAGTGACCACTGAGAGTGAT
GACCAGCCAGTCAGCATGAGTGAGCTCTACCCTCTACAGATTTCTCCTGTGTCTTCCTACGCAGAAAGCG
AAACTACCGACAGTGTGGCCAGTGATGAAGAGAACGCAGAGGGGAGACCACACTGGAGGAAGAGGAGCAT
CGAAGGCAAGCAGTACCTCAGCAACATGGGGACACGGAACACCTATCTGCTGCCCAGCATGGCGACCTTT
GTCACCTCCAACAAGCCAGATCTGCAGGTCACCATCAAAGAGGATAGCTGTCCGATGCCTTACAACAGCT
CCTGGCCCCCATTTACAGACCTTCCCCTTCCTGCCCCAGTGACCCCCACGCCCAGCAGCAGTCGGCCAGA
CCGGGAGACCCGGGCCAGTGTCATCAAGAAGACATCTGATATCACCCAGGCCCGTGTCAAGAGCTGTTAA

Translation (349 aa):
MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGID
KPDPKTWKANFRCAMNSLPDIEEVKDRSIKKGNNAFRVYRMLPLSERPSKKGKKPKTEKEERVKHIKQEP
VESSLGLSNGVSGFSPEYAVLTSAIKNEVDSTVNIIVVGQSHLDSNIEDQEIVTNPPDICQVVEVTTESD
DQPVSMSELYPLQISPVSSYAESETTDSVASDEENAEGRPHWRKRSIEGKQYLSNMGTRNTYLLPSMATF
VTSNKPDLQVTIKEDSCPMPYNSSWPPFTDLPLPAPVTPTPSSSRPDRETRASVIKKTSDITQARVKSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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