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Report for CCDS18071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18071.1 Public Mus musculus 4 Il11ra1 23 108 98 CCDS HistoryNCBI Gene:16157Re-query CCDS DB by CCDS ID:18071.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098132.10 ENSMUSP00000095736.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098132.10Link to Ensembl Protein Viewer:ENSMUSP00000095736.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098132Re-query CCDS DB by Protein ID:ENSMUSP00000095736
Original member Current member EBI ENSMUST00000108040.7 ENSMUSP00000103675.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108040.7Link to Ensembl Protein Viewer:ENSMUSP00000103675.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108040Re-query CCDS DB by Protein ID:ENSMUSP00000103675
Original member Current member EBI ENSMUST00000108041.7 ENSMUSP00000103676.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108041.7Link to Ensembl Protein Viewer:ENSMUSP00000103676.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108041Re-query CCDS DB by Protein ID:ENSMUSP00000103676
Original member Current member EBI ENSMUST00000108042.2 ENSMUSP00000103677.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108042.2Link to Ensembl Protein Viewer:ENSMUSP00000103677.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108042Re-query CCDS DB by Protein ID:ENSMUSP00000103677
Original member Current member NCBI NM_001163401.1 NP_001156873.1 Accepted alive Link to Nucleotide Sequence:NM_001163401.1Link to Protein Sequence:NP_001156873.1Re-query CCDS DB by Nucleotide ID:NM_001163401Re-query CCDS DB by Protein ID:NP_001156873Link to BLAST:NP_001156873.1
Original member Current member NCBI NM_001172054.1 NP_001165525.1 Accepted alive Link to Nucleotide Sequence:NM_001172054.1Link to Protein Sequence:NP_001165525.1Re-query CCDS DB by Nucleotide ID:NM_001172054Re-query CCDS DB by Protein ID:NP_001165525Link to BLAST:NP_001165525.1
Original member Current member NCBI NM_010549.3 NP_034679.1 Accepted alive Link to Nucleotide Sequence:NM_010549.3Link to Protein Sequence:NP_034679.1Re-query CCDS DB by Nucleotide ID:NM_010549Re-query CCDS DB by Protein ID:NP_034679Link to BLAST:NP_034679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156873.1 432 Q64385 432 100% 0 0
NP_001165525.1 432 Q64385 432 100% 0 0
NP_034679.1 432 Q64385 432 100% 0 0

Chromosomal Locations for CCDS 18071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41763582 41763681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41763825 41763885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41764709 41764878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41765007 41765121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41765275 41765307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41765386 41765552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41766111 41766274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41767460 41767601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41767946 41768071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41768169 41768265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41768493 41768575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41769080 41769120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGAGCAGCAGCTGCTCAGGGCTGACCAGGGTCCTGGTGGCCGTGGCTACAGCCCTGGTGTCTTCCTCCT
CCCCCTGCCCCCAAGCTTGGGGTCCTCCAGGGGTCCAGTATGGACAACCTGGCAGGCCCGTGATGCTGTG
CTGCCCCGGAGTGAGTGCTGGGACTCCAGTGTCCTGGTTTCGGGATGGAGATTCAAGGCTGCTCCAGGGA
CCTGACTCTGGGTTAGGACACAGACTGGTCTTGGCCCAGGTGGACAGCCCTGATGAAGGCACTTATGTCT
GCCAGACCCTGGATGGTGTATCAGGGGGCATGGTGACCCTGAAGCTGGGCTTTCCCCCAGCACGTCCTGA
AGTCTCCTGCCAAGCGGTAGACTATGAAAACTTCTCCTGTACTTGGAGTCCAGGCCAGGTCAGCGGTTTG
CCCACCCGCTACCTTACTTCCTACAGGAAGAAGACGCTGCCAGGAGCTGAGAGTCAGAGGGAAAGTCCAT
CCACCGGGCCTTGGCCGTGTCCACAGGACCCTCTGGAGGCCTCCCGATGTGTGGTCCATGGGGCAGAGTT
CTGGAGTGAGTACCGGATCAATGTGACCGAGGTGAACCCACTGGGTGCCAGCACGTGCCTACTGGATGTG
AGATTACAGAGCATCTTGCGTCCTGATCCACCCCAAGGACTGCGGGTGGAATCCGTACCTGGTTACCCGA
GACGCCTGCATGCCAGCTGGACATACCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTTCCG
GTTGCAATACCGACCAGCACAGCATCCAGCCTGGTCCACGGTGGAGCCCATTGGCTTGGAGGAAGTGATA
ACAGATGCTGTGGCTGGGCTGCCACACGCGGTACGAGTCAGTGCCAGGGACTTTCTGGATGCTGGCACCT
GGAGCGCCTGGAGCCCAGAGGCCTGGGGTACTCCTAGCACTGGTCCCCTGCAGGATGAGATACCTGATTG
GAGCCAGGGACACGGACAGCAGCTAGAGGCAGTAGTAGCTCAGGAGGACAGCCCGGCTCCTGCAAGGCCT
TCCTTGCAGCCGGACCCAAGGCCACTTGATCACAGGGACCCCTTGGAGCAAGTAGCTGTGTTAGCGTCTC
TGGGAATCTTCTCTTGCCTTGGCCTGGCTGTTGGAGCTCTGGCACTGGGGCTCTGGCTGAGGCTGAGACG
GAGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTTGGCACCCATGATCCCGGTGGAAAAGCTTCCAGGA
ATTCCAAACCTGCAGAGGACCCCAGAGAACTTCAGCTGA

Translation (432 aa):
MSSSCSGLTRVLVAVATALVSSSSPCPQAWGPPGVQYGQPGRPVMLCCPGVSAGTPVSWFRDGDSRLLQG
PDSGLGHRLVLAQVDSPDEGTYVCQTLDGVSGGMVTLKLGFPPARPEVSCQAVDYENFSCTWSPGQVSGL
PTRYLTSYRKKTLPGAESQRESPSTGPWPCPQDPLEASRCVVHGAEFWSEYRINVTEVNPLGASTCLLDV
RLQSILRPDPPQGLRVESVPGYPRRLHASWTYPASWRRQPHFLLKFRLQYRPAQHPAWSTVEPIGLEEVI
TDAVAGLPHAVRVSARDFLDAGTWSAWSPEAWGTPSTGPLQDEIPDWSQGHGQQLEAVVAQEDSPAPARP
SLQPDPRPLDHRDPLEQVAVLASLGIFSCLGLAVGALALGLWLRLRRSGKDGPQKPGLLAPMIPVEKLPG
IPNLQRTPENFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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