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Report for CCDS50212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50212.1 Public Mus musculus 18 Crem 23 108 98 CCDS HistoryNCBI Gene:12916Re-query CCDS DB by CCDS ID:50212.1Re-query CCDS DB by GeneID:12916See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149803.7 ENSMUSP00000121210.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149803.7Link to Ensembl Protein Viewer:ENSMUSP00000121210.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149803Re-query CCDS DB by Protein ID:ENSMUSP00000121210
Original member Current member NCBI NM_001110852.1 NP_001104322.1 Accepted alive Link to Nucleotide Sequence:NM_001110852.1Link to Protein Sequence:NP_001104322.1Re-query CCDS DB by Nucleotide ID:NM_001110852Re-query CCDS DB by Protein ID:NP_001104322Link to BLAST:NP_001104322.1

Chromosomal Locations for CCDS 50212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3295017 3295182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3295322 3295416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3325361 3325474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGACCATGGAAACAGTTGAATCACAGCAGGATCGAAGTGTAACACGTTCTGTGGCAGAGCATAGCTCTG
CTCATATGCAGACTGGTCAAATTTCTGTTCCTACTCTAGCTCAGGTAGCAACAATTGCAGAGACAGATGA
TTCTGCAGACTCAGAAGTAATTGATTCGCATAAACGTAGAGAAATTCTTTCACGAAGACCCTCATATAGA
AAAATACTGAATGAACTTTCCTCTGATGTGCCTGGTATTCCCAAGATTGAAGAAGAAAAATCAGAGGAAG
AAGGGACACCACCTAACATTGCTACCATGGCAGTACCAACTAGCATATATCAGACTAGCACGGGGCAATA
CAGTATGTATGCTATGATTCCATAG

Translation (124 aa):
MTMETVESQQDRSVTRSVAEHSSAHMQTGQISVPTLAQVATIAETDDSADSEVIDSHKRREILSRRPSYR
KILNELSSDVPGIPKIEEEKSEEEGTPPNIATMAVPTSIYQTSTGQYSMYAMIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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