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Report for CCDS22973.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
22973.2 |
Public |
Mus musculus |
9 |
Ei24 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:13663](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:22973.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:13663](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 22973.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000163192.10 |
ENSMUSP00000132270.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000163192.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000132270.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000163192](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000132270](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000238932.1 |
ENSMUSP00000159090.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000238932.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000159090.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000238932](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000159090](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001199494.2 |
NP_001186423.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001199494.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001186423.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001199494](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001186423](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001186423.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_007915.6 |
NP_031941.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_007915.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_031941.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_007915](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_031941](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_031941.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 22973.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1023 nt): ATGGCTGACAGTGTCAAAACCTTTCTGCAGGACCTTGGCAGGGGAATCAAAGACTCCATCTGGGGCATCT GTACCATCTCAAAGCTAGATGCTCGGATCCAGCAGAAGAGAGAGGAACAGCGTCGAAGAAGGGCAAGTAG CCTCTTGGCCCAGAGGAGACCCCAGAGTGTAGAGCGGAAGCAAGAGAGTGAACCACGTATTGTTAGTAGA ATTTTCCAGTGTTGTGCTTGGAATGGTGGAGTATTCTGGTTCAGTCTCCTCTTGTTTTATCGAGTGTTTA TTCCTGTACTTCAGTCAGTAACAGCCCGGATTATTGGAGATCCATCACTTCATGGAGATGTTTGGTCATG GCTGGAATTCTTCCTCACATCAATTTTCAGTGCTCTTTGGGTGCTCCCCCTGTTTGTGCTTAGCAAAGTT GTGAATGCCATTTGGTTCCAAGATATAGCTGACTTGGCATTTGAAGTATCAGGGAGGAAACCTCATCCAT TCCCCAGTGTCAGCAAAATAATTGCTGACATGCTCTTCAACCTTTTGCTACAGGCACTTTTCCTTATTCA GGGGATGTTTGTGAGTCTCTTCCCCATCCATCTTGTGGGTCAGCTGGTTAGTCTGCTGCATATGTCTCTT CTCTATTCACTGTACTGCTTTGAGTACCGTTGGTTCAACAAAGGAATTGAAATGCACCAGCGATTGTCGA ACATAGAAAGGAATTGGCCTTACTACTTTGGGTTTGGCTTGCCCTTGGCTTTCCTCACAGCAATGCAATC CTCCTACATTATCAGTGGCTGCCTCTTTTCTATCCTGTTTCCTTTATTCATCATCAGCGCCAATGAAGCA AAGACTCCTGGAAAAGCATATCTTTTCCAGTTGCGCCTATTCTCCTTGGTGGTCTTTTTAAGCAACAGAC TTTTCCACAAGACCGTCTACCTGCAGTCAGCCCTGAGCAGCTCGTCCTCTGCAGAGAAATTCCCTTCGCC ACATCCTTCTCCTGCCAAACTGAAAGCTGCTGCAGGCCACTGA
Translation (340 aa): MADSVKTFLQDLGRGIKDSIWGICTISKLDARIQQKREEQRRRRASSLLAQRRPQSVERKQESEPRIVSR IFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTARIIGDPSLHGDVWSWLEFFLTSIFSALWVLPLFVLSKV VNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMFVSLFPIHLVGQLVSLLHMSL LYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILFPLFIISANEA KTPGKAYLFQLRLFSLVVFLSNRLFHKTVYLQSALSSSSSAEKFPSPHPSPAKLKAAAGH
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