NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48946.1 Public Mus musculus 11 Adam11 23 108 98 CCDS HistoryNCBI Gene:11488Re-query CCDS DB by CCDS ID:48946.1Re-query CCDS DB by GeneID:11488See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068150.6 ENSMUSP00000069466.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068150.6Link to Ensembl Protein Viewer:ENSMUSP00000069466.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000068150Re-query CCDS DB by Protein ID:ENSMUSP00000069466
Original member Current member NCBI NM_001110778.2 NP_001104248.1 Accepted alive Link to Nucleotide Sequence:NM_001110778.2Link to Protein Sequence:NP_001104248.1Re-query CCDS DB by Nucleotide ID:NM_001110778Re-query CCDS DB by Protein ID:NP_001104248Link to BLAST:NP_001104248.1

Chromosomal Locations for CCDS 48946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102761621 102761684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102762148 102762332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102769894 102769970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102770121 102770187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102771235 102771320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102771435 102771510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102771915 102771981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102772045 102772112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102772455 102772529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102772612 102772683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102772835 102773001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102773394 102773478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102773577 102773667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102773775 102773826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102774266 102774365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102774442 102774513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102774632 102774724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102775031 102775111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102775650 102775700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102775793 102775856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102776066 102776165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102776316 102776435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102776529 102776697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102776789 102776903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102776988 102777078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102777631 102777679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGAGGCGGCTGCGGCGCTGGGCGATCGCGGCTCTGCTGCTGTTACCGCTTCTCCCCCCGCCCGGTCTTG
GGGCCCTGGGTCCCAGAGGAGCTCTGCACTGGAGGAGCTCAGCCCATGTGGGGAGCCCAGAGAGTCCAGA
GGGCTCTGAGGTCACAGAGCCCAGCCGGCTGGTAAGGCAGAGCTCCGGGGGAGAGGTCCGAAAGCCACAG
TTGGACACCAGGGTCCGCCAGGATCCGCCCAGGGGGACGCCTGTGCACCTGGCCCAGGTGAGTTTCGTCA
TCCCGGCCTTCGACTCAAACTTCACTCTGGACCTGGAGCTGAACCATCACCTCCTGTCCTCGCAGTATGT
GGAGCGCCACTTCAGCCGGGAGGGAACAAGACAACACAGCACTGGGGCTGGAGACCACTGCTACTACCAT
GGGAAACTCCGGGGCAACCCACAGTCCTTTGCTGCACTCTCTACATGCCAGGGGCTGCATGGGGTCTTCT
CTGATGGCAACCTGACTTACATCGTAGAGCCTAAGGAGATAGCTGGGCCCTGGGGACCCCCACAGGGACC
CCTTCCCCACCTCATTTACCGGACCCCTCTCCTCCCAGCCCCCCTTGGATGCAGGGAGCCAGGCTGCCTG
TTTGCTGTCCCTGCCCAGTCTGCTCTCCCCAACTGGCCCAAGCTAAGAAGGAAAAGGCAGGTCCGCAGGG
GCCACCCCACAGTGCACAGCGAGACCAAGTATGTGGAGTTGATTGTAATCAATGACCACCAGCTGTTTGA
GCAGATGCGGCAGTCAGTGGTCCTCACCAGCAACTTTGCAAAATCTGTTGTGAACCTGGCAGATGTGATA
TACAAGGAACAGCTCAACACAAGAATTGTTCTGGTTGCCATGGAAACGTGGGCAGATGGGGACAAGATCC
AGGTGCAGGATGACCTACTGGAGACCCTGGCCCGGCTTATGGTCTACCGGCGGGAGGGTCTGCCTGAGCC
CAGTGATGCCACCCACCTCTTCTCGGGTAGAACCTTCCAGAGCACCAGCAGCGGGGCGGCCTACGTGGGA
GGCATCTGTTCACTGTCCCGGGGTGGAGGTGTGAACGAGTATGGCAACATGGGTGCCATGGCGGTGACCC
TGGCCCAGACGCTAGGGCAGAACTTGGGCATGATGTGGAATAAGCACCGGAGCTCAGCAGGGGACTGCAA
GTGTCCAGACATTTGGCTGGGCTGCATCATGGAGGACACTGGGTTCTATTTGCCCCGCAAGTTCTCGCGC
TGCAGCATCGACGAATACAACCAGTTTCTGCAGGAGGGAGGCGGGAGCTGCCTGTTCAACAAGCCCCTCA
AGCTTCTGGACCCTCCCGAGTGCGGAAACGGCTTCGTGGAGGCGGGAGAGGAGTGCGACTGCGGGTCGGT
GCAGGAGTGCAGCCGAGCAGGGGGCAACTGCTGCAAAAAATGCACCTTGACGCACGACGCCATGTGCAGC
GATGGGCTCTGTTGTCGCCGCTGCAAGTATGAGCCACGAGGTGTCTCCTGCCGAGAAGCGGTGAATGAGT
GTGACATTGCAGAGACCTGCACCGGCGACTCAAGCCAGTGTCCCCCTAACCTTCACAAGCTGGACGGTTA
CTACTGTGATCATGAGCAGGGTCGTTGCTATGGAGGCCGCTGTAAAACCCGGGACCGGCAGTGCCAAGCC
CTATGGGGCCATGCGGCTGCGGATCGTTTCTGCTATGAGAAGCTGAACGTGGAGGGGACAGAGCGTGGAA
ACTGTGGACGCAAGGGATCTGGTTGGGTCCAGTGCAGTAAGCAGGATGTGCTCTGTGGCTTCCTTCTGTG
CGTCAACATCTCTGGAGCTCCGCGGCTAGGGGATCTGGGGGGCGACATCAGCAGTGTCACCTTCTACCAC
CAGGGCAAGGAGTTGGACTGCAGGGGAGGCCACGTGCAGCTAGCTGATGGCTCGGACCTGAGCTATGTGG
AGGACGGCACGGCCTGTGGGCCCAACATGTTGTGCCTAGATCACCGCTGCCTGCCAGCCTCTGCCTTCAA
CTTCAGCACCTGCCCTGGAAGTGGAGAGCGAAGGATCTGCTCCCATCATGGGGTTTGCAGCAACGAGGGG
AAGTGTATCTGTCAGCCAGACTGGACAGGCAAAGACTGCAGTATTCACAACCCACTGCCCACGTCCCCTC
CCACTGGGGAGACTGAGAGATACAAAGGTCCCAGCGGTACCAACATCATCATTGGCTCCATCGCCGGGGC
TGTCCTGGTCGCAGCCATCGTCCTGGGCGGCACGGGCTGGGGATTTAAAAACATCCGTCGTGGAAGGTAC
GACCCGACCCAGCAGGGGGCAGTGTGA

Translation (778 aa):
MRRLRRWAIAALLLLPLLPPPGLGALGPRGALHWRSSAHVGSPESPEGSEVTEPSRLVRQSSGGEVRKPQ
LDTRVRQDPPRGTPVHLAQVSFVIPAFDSNFTLDLELNHHLLSSQYVERHFSREGTRQHSTGAGDHCYYH
GKLRGNPQSFAALSTCQGLHGVFSDGNLTYIVEPKEIAGPWGPPQGPLPHLIYRTPLLPAPLGCREPGCL
FAVPAQSALPNWPKLRRKRQVRRGHPTVHSETKYVELIVINDHQLFEQMRQSVVLTSNFAKSVVNLADVI
YKEQLNTRIVLVAMETWADGDKIQVQDDLLETLARLMVYRREGLPEPSDATHLFSGRTFQSTSSGAAYVG
GICSLSRGGGVNEYGNMGAMAVTLAQTLGQNLGMMWNKHRSSAGDCKCPDIWLGCIMEDTGFYLPRKFSR
CSIDEYNQFLQEGGGSCLFNKPLKLLDPPECGNGFVEAGEECDCGSVQECSRAGGNCCKKCTLTHDAMCS
DGLCCRRCKYEPRGVSCREAVNECDIAETCTGDSSQCPPNLHKLDGYYCDHEQGRCYGGRCKTRDRQCQA
LWGHAAADRFCYEKLNVEGTERGNCGRKGSGWVQCSKQDVLCGFLLCVNISGAPRLGDLGGDISSVTFYH
QGKELDCRGGHVQLADGSDLSYVEDGTACGPNMLCLDHRCLPASAFNFSTCPGSGERRICSHHGVCSNEG
KCICQPDWTGKDCSIHNPLPTSPPTGETERYKGPSGTNIIIGSIAGAVLVAAIVLGGTGWGFKNIRRGRY
DPTQQGAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH