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Report for CCDS17776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17776.1 Public Mus musculus 3 Amy1 23 108 98 CCDS HistoryNCBI Gene:11722Re-query CCDS DB by CCDS ID:17776.1Re-query CCDS DB by GeneID:11722See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067980.11 ENSMUSP00000070368.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067980.11Link to Ensembl Protein Viewer:ENSMUSP00000070368.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000067980Re-query CCDS DB by Protein ID:ENSMUSP00000070368
Original member Current member EBI ENSMUST00000106540.7 ENSMUSP00000102150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106540.7Link to Ensembl Protein Viewer:ENSMUSP00000102150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106540Re-query CCDS DB by Protein ID:ENSMUSP00000102150
Original member Current member NCBI NM_001110505.1 NP_001103975.1 Accepted alive Link to Nucleotide Sequence:NM_001110505.1Link to Protein Sequence:NP_001103975.1Re-query CCDS DB by Nucleotide ID:NM_001110505Re-query CCDS DB by Protein ID:NP_001103975Link to BLAST:NP_001103975.1
Original member Current member NCBI NM_007446.2 NP_031472.2 Accepted alive Link to Nucleotide Sequence:NM_007446.2Link to Protein Sequence:NP_031472.2Re-query CCDS DB by Nucleotide ID:NM_007446Re-query CCDS DB by Protein ID:NP_031472Link to BLAST:NP_031472.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103975.1 511 P00687 511 100% 0 0
NP_031472.2 511 P00687 511 100% 0 0

Chromosomal Locations for CCDS 17776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113555984 113556173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113558093 113558218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113558322 113558440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113561632 113561731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113561824 113561946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113562628 113562761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113563445 113563675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113564869 113565066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113569382 113569528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113569845 113570012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGAAATTCTTCCTGCTGCTTTCCCTCATTGGATTCTGCTGGGCCCAATATGACCCACATACTCAATATG
GACGAACTGCTATTGTCCACCTGTTTGAGTGGCGCTGGGTTGATATTGCTAAGGAATGTGAGAGATACTT
AGCTCCTAATGGATTTGCAGGTGTGCAGGTCTCTCCACCCAATGAAAACATCGTAGTCCACAGCCCTTCA
AGACCATGGTGGGAAAGATATCAACCAATTAGCTACAAAATATGTTCCAGGTCTGGAAATGAAGATGAAT
TCAGGGACATGGTGAACAGGTGCAACAATGTTGGTGTCCGTATTTATGTGGATGCTGTCATTAACCACAT
GTGTGGAGTGGGGGCTCAAGCTGGACAAAGCAGTACATGTGGAAGTTATTTCAACCCAAATAACAGGGAC
TTTCCTGGAGTTCCCTATTCTGGTTTTGACTTTAATGATGGAAAATGTAGAACTGCAAGTGGAGGTATCG
AGAACTACCAAGATGCTGCTCAGGTCAGAGATTGTCGTCTGTCTGGCCTTCTGGATCTTGCACTTGAGAA
AGATTATGTTCGAACCAAGGTGGCTGACTATATGAACCATCTCATTGACATTGGCGTAGCAGGGTTCAGA
CTTGATGCTTCTAAGCACATGTGGCCTGGAGACATAAAGGCAATTTTGGACAAACTGCATAATCTCAATA
CAAAATGGTTCTCCCAAGGAAGCAGACCTTTCATTTTCCAAGAGGTGATTGATCTGGGTGGTGAGGCAGT
GTCAAGTAATGAGTATTTTGGAAATGGCCGTGTGACAGAATTCAAATATGGAGCAAAATTGGGCAAAGTT
ATGCGCAAGTGGGATGGAGAAAAGATGTCCTACTTAAAGAACTGGGGAGAAGGTTGGGGTTTGATGCCTT
CTGACAGAGCCCTTGTGTTTGTGGACAACCATGACAATCAGCGAGGACATGGTGCTGGGGGAGCATCCAT
CTTGACATTCTGGGATGCTAGACTCTATAAAATGGCTGTTGGCTTTATGTTGGCTCATCCTTATGGTTTC
ACACGGGTGATGTCAAGTTACTATTGGCCAAGAAATTTCCAGAATGGAAAAGATGTCAATGACTGGGTTG
GACCACCAAATAACAATGGAAAAACCAAAGAAGTGAGCATTAACCCAGACAGCACTTGTGGCAATGACTG
GATCTGTGAACATCGATGGCGTCAAATAAGGAACATGGTTGCCTTCAGAAATGTCGTCAATGGTCAGCCT
TTTGCAAACTGGTGGGATAATGACAGCAACCAGGTAGCTTTTGGCAGAGGAAACAAAGGATTCATTGTCT
TTAACAATGATGACTGGGCTTTGTCAGAAACTTTACAGACTGGTCTTCCTGCTGGCACATACTGTGATGT
CATTTCTGGAGATAAAGTCGATGGCAATTGCACTGGAATAAAAGTCTATGTTGGCAATGATGGCAAAGCT
CACTTTTCTATTAGTAACTCTGCCGAAGACCCATTTATTGCAATCCATGCAGAGTCAAAAATATAA

Translation (511 aa):
MKFFLLLSLIGFCWAQYDPHTQYGRTAIVHLFEWRWVDIAKECERYLAPNGFAGVQVSPPNENIVVHSPS
RPWWERYQPISYKICSRSGNEDEFRDMVNRCNNVGVRIYVDAVINHMCGVGAQAGQSSTCGSYFNPNNRD
FPGVPYSGFDFNDGKCRTASGGIENYQDAAQVRDCRLSGLLDLALEKDYVRTKVADYMNHLIDIGVAGFR
LDASKHMWPGDIKAILDKLHNLNTKWFSQGSRPFIFQEVIDLGGEAVSSNEYFGNGRVTEFKYGAKLGKV
MRKWDGEKMSYLKNWGEGWGLMPSDRALVFVDNHDNQRGHGAGGASILTFWDARLYKMAVGFMLAHPYGF
TRVMSSYYWPRNFQNGKDVNDWVGPPNNNGKTKEVSINPDSTCGNDWICEHRWRQIRNMVAFRNVVNGQP
FANWWDNDSNQVAFGRGNKGFIVFNNDDWALSETLQTGLPAGTYCDVISGDKVDGNCTGIKVYVGNDGKA
HFSISNSAEDPFIAIHAESKI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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