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Report for CCDS23224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23224.1 Public Mus musculus 9 Scamp2 23 108 98 CCDS HistoryNCBI Gene:24044Re-query CCDS DB by CCDS ID:23224.1Re-query CCDS DB by GeneID:24044See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045791.10 ENSMUSP00000038350.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045791.10Link to Ensembl Protein Viewer:ENSMUSP00000038350.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000045791Re-query CCDS DB by Protein ID:ENSMUSP00000038350
Original member Current member NCBI NM_022813.3 NP_073724.1 Accepted alive Link to Nucleotide Sequence:NM_022813.3Link to Protein Sequence:NP_073724.1Re-query CCDS DB by Nucleotide ID:NM_022813Re-query CCDS DB by Protein ID:NP_073724Link to BLAST:NP_073724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073724.1 329 Q9ERN0 329 100% 0 0

Chromosomal Locations for CCDS 23224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57561054 57561110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57577193 57577261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57577639 57577737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57579433 57579550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57580784 57580912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57581490 57581649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57582852 57582953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57587080 57587200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57587422 57587556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGTCGGCCTTCGACACTAACCCCTTCGCGGACCCAGTGGACGTAAACCCCTTCCAGGATCCCTCTGTGA
CCCAGCTGACCAATGCTCCTCAGAGTGGCCTGGCTGAGTTCAATCCCTTCTCAGAGACAAATGCAGCGAC
AACAGTTCCTGCCACACAAGCTCCTGGGCCCTCCCAGCCAGCAGTTCTCCAGCCCTCAGTGGAACCAGCA
CAGCCAACGCCCCAGGCTGTTGCAGCTGCGGCCCAGGCAGGCTTGCTTCGACAGCAGGAAGAACTAGACA
GGAAAGCTGCCGAGCTGGAACGCAAGGAGCGAGAGTTGCAGAACACTGCAGCGAATTTGCATGTGCGAGA
CAACAACTGGCCGCCACTCCCCTCATGGTGCCCTGTGAAACCCTGCTTCTATCAGGACTTCTCCACGGAG
ATCCCTGCTGACTACCAGCGGATTTGCAAGATGCTTTACTATCTCTGGATGTTGCATTCAGTGACTCTGT
TTCTAAACCTGCTTGCGTGCCTGGCCTGGTTCACAAGTGACGCAGCCAATGGAACAGCCTTTGGCCTCTC
CATCCTTTGGTTTCTGATCTTCACTCCCTGTGCCTTCCTTTGTTGGTACCGACCCATCTACAAGGCTTTC
AGGTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTTTTTGTATTTTTTTGTCAAATAGGGATCTACTTCA
TCCAGTTGATTGGCTTGCCTAACTTGGGGACCAGTGGTTGGCTTGCAGCCCTATCTACGATGAAAAATGG
GCCCTTAGCTGTGACCATCATCATGATGGTAGTGGCTGGCTTCTTTACCCTCTGTGCTGGGCTTTCACTC
TTCCTCCTGCAGCGGGTACACGCCTTCTACCGCCGAACAGGAGCCAGCTTCCAGCAGGCCCAGGAAGAGT
TCTCCCAGGGTATCTTCAGCAGCAGAACCTTTCGCGGGGCTGCCTCATCTGCTGCCCGAGGAGCCTTTCA
GGGGAATTAG

Translation (329 aa):
MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQSGLAEFNPFSETNAATTVPATQAPGPSQPAVLQPSVEPA
QPTPQAVAAAAQAGLLRQQEELDRKAAELERKERELQNTAANLHVRDNNWPPLPSWCPVKPCFYQDFSTE
IPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFTSDAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAF
RSDNSFSFFVFFFVFFCQIGIYFIQLIGLPNLGTSGWLAALSTMKNGPLAVTIIMMVVAGFFTLCAGLSL
FLLQRVHAFYRRTGASFQQAQEEFSQGIFSSRTFRGAASSAARGAFQGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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